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Gene Expression Data
Assay Details
Assay
Reference: J:186285 Lefkovics K, et al., Comparative analysis of type II classic cadherin mRNA distribution patterns in the developing and adult mouse somatosensory cortex and hippocampus suggests significant functional redundancy. J Comp Neurol. 2012 May 1;520(7):1387-1405
Assay type: RNA in situ
MGI Accession ID: MGI:7492300
Gene symbol: Cdh20
Gene name: cadherin 20
Probe: Cdh20 cDNA
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Using another probe (MGI:6169482) based on the Allen Brain Atlas probe information showed identical expression pattern.
Results
Specimen 3N: postnatal adult (more )
Structure Level Pattern Image Note
TS28: somatosensory cortex Present 3N
Specimen 5J: embryonic day 14.0 (more )
Structure Cell Type Level Pattern Image Note
TS22: hippocampus GABAergic interneuron Present Regionally restricted 5J Expressed in the ammonic neuroepithelium/preplate and the ventricular zone. Summarized in Table 3.
Specimen 5K: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: hippocampus Present Regionally restricted 5K Expressed in the hippocampal plate (the future pyramidal cell layer).
TS24: hippocampus ventricular layer Present 5K
TS24: dentate gyrus Present Regionally restricted 5K Weak expression in the ventricular zone.
Specimen 5L: postnatal day 1 (more )
Structure Level Pattern Image Note
TS27: hippocampus pyramidal cell layer Present 5L Expressed at the same level in CA1 and CA3.
TS27: CA1 pyramidal cell layer Present 5L Summarized in Table 3.
TS27: dentate gyrus hilus Present 5L Summarized in Table 3.
TS27: hippocampus CA3 Present 5L Summarized in Table 3.
TS27: hippocampus molecular layer Present 5L Summarized in Table 3.
TS27: hippocampus stratum lacunosum Present 5L Summarized in Table 3.
TS27: hippocampus stratum lucidum Present 5L Summarized in Table 3.
TS27: hippocampus stratum oriens Present 5L Summarized in Table 3.
TS27: hippocampus stratum radiatum Present 5L Summarized in Table 3.
Specimen 7D1: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: hippocampus stratum oriens Present Single cells 7D1 Expressed only in a few cells.
TS28: CA1 pyramidal cell layer Strong 7D1
TS28: hippocampus stratum radiatum Present 7D1
Specimen 7D2: postnatal adult (more )
Structure Level Pattern Image Note
TS28: hippocampus stratum oriens Present Single cells 7D2 Expressed only in a few cells.
TS28: CA1 pyramidal cell layer Strong 7D2
TS28: hippocampus stratum radiatum Present 7D2
Specimen 7D3: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: CA3 pyramidal cell layer Strong 7D3
TS28: hippocampus stratum lucidum Present 7D3
Specimen 7D4: postnatal adult (more )
Structure Level Pattern Image Note
TS28: CA3 pyramidal cell layer Strong 7D4
TS28: hippocampus stratum lucidum Present 7D4
Specimen 7D5: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: dentate gyrus granule cell layer Weak 7D5
TS28: dentate gyrus hilus Present 7D5
Specimen 7D6: postnatal adult (more )
Structure Level Pattern Image Note
TS28: dentate gyrus granule cell layer Present 7D6 Significantly increased expression.
TS28: dentate gyrus hilus Present 7D6
TS28: dentate gyrus molecular layer Present Regionally restricted 7D6 Expressed in cells close to the granule cell layer.
Specimen 8J: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: hippocampus molecular layer Present 8J
TS28: hippocampus stratum lacunosum Present 8J
TS28: hippocampus stratum radiatum Present 8J
Specimen 10D1: embryonic day 14.0 (more )
Note: Summarized in Fig. 11.
Structure Level Pattern Image Note
TS22: cerebral cortex marginal layer Present 10D1
TS22: cerebral cortex ventricular layer Present 10D1
TS22: cortical plate Present 10D1
TS22: cerebral cortex intermediate zone Absent 10D1
TS22: cerebral cortex subventricular zone Absent 10D1
TS22: cortical subplate Absent 10D1
Specimen 10D2: embryonic day 16.0 (more )
Note: Summarized in Fig. 11.
Structure Level Pattern Image Note
TS24: cerebral cortex intermediate zone Present 10D2
TS24: cerebral cortex marginal layer Present 10D2
TS24: cerebral cortex subventricular zone Present 10D2
TS24: cerebral cortex ventricular layer Present 10D2
TS24: cortical plate Present 10D2
TS24: cortical subplate Absent 10D2
Specimen 10D3: embryonic day 18.0 (more )
Structure Level Pattern Image Note
TS26: cerebral cortex ventricular layer Present 10D3
Specimen 10D4: postnatal day 1 (more )
Note: Summarized in Fig. 11.
Structure Level Pattern Image Note
TS27: cerebral cortex intermediate zone Absent 10D4
TS27: cortical layer I Present 10D4
TS27: cortical layer II Present 10D4
TS27: cortical layer III Present 10D4
TS27: cortical layer IV Present 10D4
TS27: cortical layer V Present 10D4
TS27: cortical layer VI Present 10D4
TS27: cortical subplate Present 10D4
Specimen 10D5: postnatal day 10 (more )
Note: Summarized in Fig. 11.
Structure Level Pattern Image Note
TS28: cortical layer I Present 10D5
TS28: cortical layer II Present 10D5
TS28: cortical layer III Present 10D5
TS28: cortical layer IV Present 10D5
TS28: cortical layer V Present 10D5
TS28: cortical layer VI Present 10D5
TS28: cortical subplate Present 10D5
TS28: cerebral hemisphere white matter Absent 10D5
Specimen 10D6: postnatal adult (more )
Note: Summarized in Fig. 11.
Structure Level Pattern Image Note
TS28: cortical layer I Present 10D6 Expressed more strongly.
TS28: cortical layer II Present 10D6 Expressed more strongly.
TS28: cortical layer III Present 10D6 Expressed more strongly.
TS28: cortical layer IV Present 10D6 Expressed more strongly.
TS28: cortical layer V Present 10D6 Expressed more strongly.
TS28: cortical layer VI Present 10D6 Expressed more strongly.
TS28: cortical subplate Present 10D6 Expressed more strongly.
TS28: cerebral hemisphere white matter Absent 10D6
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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05/14/2024
MGI 6.23 		The Jackson Laboratory