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Gene Expression Data
Assay Details
Assay
Reference: J:186285 Lefkovics K, et al., Comparative analysis of type II classic cadherin mRNA distribution patterns in the developing and adult mouse somatosensory cortex and hippocampus suggests significant functional redundancy. J Comp Neurol. 2012 May 1;520(7):1387-1405
Assay type: RNA in situ
MGI Accession ID: MGI:7492298
Gene symbol: Cdh18
Gene name: cadherin 18
Probe: Cdh14 cDNA
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Using another probe (MGI:7492016) based on the Allen Brain Atlas probe information showed identical expression pattern.
Results
Specimen 3J: postnatal adult (more )
Structure Level Pattern Image Note
TS28: somatosensory cortex Present 3J
Specimen 5D: embryonic day 14.0 (more )
Structure Cell Type Level Pattern Image Note
TS22: hippocampus GABAergic interneuron Present Regionally restricted 5D Expressed in the ventricular zone. Summarized in Table 3.
Specimen 5E: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: hippocampus ventricular layer Present 5E Summarized in Table 3.
TS24: dentate gyrus Present Regionally restricted 5E Weak expression in the ventricular zone.
Specimen 5F: postnatal day 1 (more )
Structure Level Pattern Image Note
TS27: hippocampus pyramidal cell layer Present 5F Expressed at the same level in CA1 and CA3.
TS27: CA1 pyramidal cell layer Present 5F Summarized in Table 3.
TS27: dentate gyrus granule cell layer Present 5F Summarized in Table 3.
TS27: dentate gyrus hilus Present 5F Summarized in Table 3.
TS27: dentate gyrus molecular layer Present 5F Summarized in Table 3.
TS27: hippocampus CA3 Present 5F Summarized in Table 3.
TS27: hippocampus molecular layer Present 5F Summarized in Table 3.
TS27: hippocampus stratum lacunosum Present 5F Summarized in Table 3.
TS27: hippocampus stratum lucidum Present 5F Summarized in Table 3.
TS27: hippocampus stratum radiatum Present 5F Summarized in Table 3.
Specimen 7B1: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: hippocampus stratum oriens Present Scattered 7B1 Expressed in a large number of cells.
TS28: CA1 pyramidal cell layer Strong 7B1
TS28: hippocampus stratum radiatum Present 7B1
TS28: hippocampus molecular layer Ambiguous 7B1
TS28: hippocampus stratum lacunosum Ambiguous 7B1
Specimen 7B2: postnatal adult (more )
Structure Level Pattern Image Note
TS28: hippocampus stratum oriens Present Scattered 7B2 Expressed in a large number of cells.
TS28: CA1 pyramidal cell layer Strong 7B2
TS28: hippocampus molecular layer Present 7B2
TS28: hippocampus stratum lacunosum Present 7B2
TS28: hippocampus stratum radiatum Present 7B2
Specimen 7B3: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: CA3 pyramidal cell layer Strong 7B3
TS28: hippocampus stratum lucidum Present 7B3
Specimen 7B4: postnatal adult (more )
Structure Level Pattern Image Note
TS28: CA3 pyramidal cell layer Strong 7B4
TS28: hippocampus stratum lucidum Present 7B4
Specimen 7B5: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: dentate gyrus granule cell layer Weak 7B5
TS28: dentate gyrus hilus Present 7B5
Specimen 7B6: postnatal adult (more )
Structure Level Pattern Image Note
TS28: dentate gyrus granule cell layer Trace 7B6 Expression weakened to almost undetectable levels.
TS28: dentate gyrus hilus Present 7B6
Specimen 8H: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: hippocampus stratum radiatum Trace 8H Also expressed in cells on the stratum radiatum-stratum lacunosum-moleculare border.
Specimen 10B1: embryonic day 14.0 (more )
Note: Summarized in Fig. 11.
Structure Level Pattern Image Note
TS22: cerebral cortex marginal layer Present 10B1
TS22: cerebral cortex ventricular layer Present 10B1
TS22: cortical plate Present 10B1
TS22: cerebral cortex intermediate zone Absent 10B1
TS22: cerebral cortex subventricular zone Absent 10B1
TS22: cortical subplate Absent 10B1
Specimen 10B2: embryonic day 16.0 (more )
Note: Summarized in Fig. 11.
Structure Level Pattern Image Note
TS24: cerebral cortex intermediate zone Present 10B2
TS24: cerebral cortex marginal layer Present 10B2
TS24: cerebral cortex subventricular zone Present 10B2
TS24: cerebral cortex ventricular layer Present 10B2
TS24: cortical plate Present 10B2
TS24: cortical subplate Absent 10B2
Specimen 10B3: embryonic day 18.0 (more )
Structure Level Pattern Image Note
TS26: cerebral cortex ventricular layer Present 10B3
Specimen 10B4: postnatal day 1 (more )
Note: Summarized in Fig. 11.
Structure Level Pattern Image Note
TS27: cerebral cortex intermediate zone Absent 10B4
TS27: cortical layer I Present 10B4
TS27: cortical layer II Present 10B4
TS27: cortical layer III Present 10B4
TS27: cortical layer IV Present 10B4
TS27: cortical layer V Present 10B4
TS27: cortical layer VI Present 10B4
TS27: cortical subplate Present 10B4
Specimen 10B5: postnatal day 10 (more )
Note: Summarized in Fig. 11.
Structure Level Pattern Image Note
TS28: cortical layer I Present 10B5
TS28: cortical layer II Present 10B5
TS28: cortical layer III Present 10B5
TS28: cortical layer IV Present 10B5
TS28: cortical layer V Present 10B5
TS28: cortical layer VI Present 10B5
TS28: cortical subplate Present 10B5
TS28: cerebral hemisphere white matter Absent 10B5
Specimen 10B6: postnatal adult (more )
Note: Summarized in Fig. 11.
Structure Level Pattern Image Note
TS28: cerebral hemisphere white matter Absent 10B6
TS28: cortical layer I Absent 10B6
TS28: cortical layer II Present 10B6
TS28: cortical layer III Present 10B6
TS28: cortical layer IV Present 10B6
TS28: cortical layer V Present 10B6
TS28: cortical layer VI Present 10B6
TS28: cortical subplate Present 10B6
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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04/16/2024
MGI 6.23 		The Jackson Laboratory