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Gene Expression Data
Assay Details
Assay
Reference: J:333946 Hattori Y, et al., CD206(+) macrophages transventricularly infiltrate the early embryonic cerebral wall to differentiate into microglia. Cell Rep. 2023 Feb 7;42(2):112092
Assay type: In situ reporter (knock in)
MGI Accession ID: MGI:7488349
Gene symbol: Cx3cr1
Gene name: C-X3-C motif chemokine receptor 1
Reporter: GFP
Antibody: anti-GFP
Detection system: Secondary antibody
Results
Specimen 1A E12.5 CX3CR1: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Structure Cell Type Level Pattern Image Note
TS20: pallium myeloid cell Present Regionally restricted 1A E12.5 CX3CR1 Expression in cells in cerebral wall.

Specimen 1A E13.5 CX3CR1: embryonic day 13.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Structure Cell Type Level Pattern Image Note
TS21: pallium myeloid cell Present Regionally restricted 1A E13.5 CX3CR1 Expression in cells in cerebral wall.

Specimen 1A E14.5 CX3CR1: embryonic day 14.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Structure Cell Type Level Pattern Image Note
TS22: pallium myeloid cell Present Regionally restricted 1A E14.5 CX3CR1 Expression in cells in cerebral wall.

Specimen 1F E12.5 CX3CR1: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Structure Cell Type Level Pattern Image Note
TS20: brain meninges myeloid cell Present 1F E12.5 CX3CR1 Expression in cells between meninges and ventricle.
TS20: lateral ventricle myeloid cell Present 1F E12.5 CX3CR1 Expression in cells between meninges and ventricle.

Specimen 1F E13.5 CX3CR1: embryonic day 13.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Structure Cell Type Level Pattern Image Note
TS21: lateral ventricle myeloid cell Present 1F E13.5 CX3CR1 Expression in cells between meninges and ventricle.
TS21: telencephalon meninges myeloid cell Present 1F E13.5 CX3CR1 Expression in cells between meninges and ventricle.

Specimen S1B E15.5 CX3CR1: embryonic day 15.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Structure Cell Type Level Pattern Image Note
TS23: lateral ventricle myeloid cell Present Regionally restricted S1B E15.5 CX3CR1 Most intraventricular Cx3cr1-expressing cells were attached to inner/apical surface of cerebral wall

Specimen S1B E16.5 CX3CR1: embryonic day 16.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Structure Cell Type Level Pattern Image Note
TS24: lateral ventricle myeloid cell Present Regionally restricted S1B E16.5 CX3CR1 Most intraventricular Cx3cr1-expressing cells were attached to inner/apical surface of cerebral wall

Specimen S1C E14.5 CX3CR1: embryonic day 14.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Structure Cell Type Level Pattern Image Note
TS22: pallium myeloid cell Present S1C E14.5 CX3CR1

Specimen S1C E15.5 CX3CR1: embryonic day 15.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Structure Cell Type Level Pattern Image Note
TS23: pallium myeloid cell Present S1C E15.5 CX3CR1

Specimen S1C E16.5 CX3CR1: embryonic day 16.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Structure Cell Type Level Pattern Image Note
TS24: pallium myeloid cell Present S1C E16.5 CX3CR1

Specimen S1G E12.5 CX3CR1: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Structure Cell Type Level Pattern Image Note
TS20: pallium myeloid cell Present S1G E12.5 CX3CR1

Specimen S1G E13.5 CX3CR1: embryonic day 13.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Structure Cell Type Level Pattern Image Note
TS21: pallium myeloid cell Present S1G E13.5 CX3CR1

Specimen S1G E14.5 CX3CR1: embryonic day 14.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Structure Cell Type Level Pattern Image Note
TS22: pallium myeloid cell Present S1G E14.5 CX3CR1

Specimen S1G E15.5 CX3CR1: embryonic day 15.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Structure Cell Type Level Pattern Image Note
TS23: pallium myeloid cell Present S1G E15.5 CX3CR1

Specimen S1G E16.5 CX3CR1: embryonic day 16.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Structure Cell Type Level Pattern Image Note
TS24: pallium myeloid cell Present S1G E16.5 CX3CR1

Specimen 1M (left) CX3CR1: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Note: Triple labeled: green - Cx3cr1 reporter; red - Mrc1 (assay MGI:7488358); cyan - Tjp1 (assay MGI:7488361).
Structure Cell Type Level Pattern Image Note
TS20: lateral ventricle myeloid cell Present Regionally restricted 1M (left) Expression in cells attached to apical surface.

Specimen 1M right) CX3CR1: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Note: Triple labeled: green - Cx3cr1 reporter; red - Mrc1 (assay MGI:7488358); cyan - Tjp1 (assay MGI:7488361).
Structure Cell Type Level Pattern Image Note
TS20: lateral ventricle central nervous system macrophage Present Regionally restricted 1M (right) Expression in intraventricular macrophages with extension of thin protrusions reaching the subapical parenchyma.

Specimen 3A Coronal plane: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Structure Cell Type Level Pattern Image Note
TS20: brain roof plate myeloid cell Present Regionally restricted 3A Coronal plane Expression in cells accumulating at midline portion of roof plate.

Specimen 3A Horizontal plane: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Structure Cell Type Level Pattern Image Note
TS20: brain roof plate myeloid cell Present Regionally restricted 3A Horizontal plane Expression in cells accumulating at midline portion of roof plate.

Specimen 3B -160: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Structure Cell Type Level Pattern Image Note
TS20: pallium myeloid cell Present Regionally restricted 3B -160 Authors report transepithelial migration of cells.

Specimen 3B -80: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Structure Cell Type Level Pattern Image Note
TS20: brain roof plate myeloid cell Present Regionally restricted 3B -80 Expression in many infiltrated cells within roof plate. Region traversed by expressing cells restricted to extremely narrow space.

Specimen 3B 0: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Structure Cell Type Level Pattern Image Note
TS20: brain roof plate myeloid cell Present Regionally restricted 3B 0 Expression in many infiltrated cells within roof plate. Region traversed by expressing cells restricted to extremely narrow space.

Specimen 3B +80: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Structure Cell Type Level Pattern Image Note
TS20: brain roof plate myeloid cell Present Regionally restricted 3B +80 Expression in many infiltrated cells within roof plate. Region traversed by expressing cells restricted to extremely narrow space.

Specimen 3B +160: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Structure Cell Type Level Pattern Image Note
TS20: pallium myeloid cell Present Regionally restricted 3B +160 Authors report transepithelial migration of cells.

Specimen 3C: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Structure Cell Type Level Pattern Image Note
TS20: brain roof plate myeloid cell Present Regionally restricted 3C Authors report transepithelial migration of cells.

Specimen 3D CX3CR1: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Note: Double labeled: green - Cx3cr1 reporter; red - Tjp1 (assay MGI:7488361).
Structure Cell Type Level Pattern Image Note
TS20: brain roof plate myeloid cell Present Regionally restricted 3D Expression in cells localized along surface of roof plate.

Specimen S3-1: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Note: Sequential coronal sections ordered from anterior to posterior.
Structure Cell Type Level Pattern Image Note
TS20: pallium myeloid cell Present S3-1

Specimen S3-2: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Note: Sequential coronal sections ordered from anterior to posterior.
Structure Cell Type Level Pattern Image Note
TS20: pallium myeloid cell Present S3-2

Specimen S3-3: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Note: Sequential coronal sections ordered from anterior to posterior.
Structure Cell Type Level Pattern Image Note
TS20: pallium myeloid cell Present S3-3

Specimen S3-4: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Note: Sequential coronal sections ordered from anterior to posterior.
Structure Cell Type Level Pattern Image Note
TS20: pallium myeloid cell Present S3-4

Specimen S3-5: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Note: Sequential coronal sections ordered from anterior to posterior.
Structure Cell Type Level Pattern Image Note
TS20: pallium myeloid cell Present S3-5

Specimen S3-6: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Note: Sequential coronal sections ordered from anterior to posterior.
Structure Cell Type Level Pattern Image Note
TS20: pallium myeloid cell Present S3-6

Specimen S3-7: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Note: Sequential coronal sections ordered from anterior to posterior.
Structure Cell Type Level Pattern Image Note
TS20: pallium myeloid cell Present S3-7

Specimen S3-8: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Note: Sequential coronal sections ordered from anterior to posterior.
Structure Cell Type Level Pattern Image Note
TS20: pallium myeloid cell Present S3-8

Specimen S3-9: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Note: Sequential coronal sections ordered from anterior to posterior.
Structure Cell Type Level Pattern Image Note
TS20: pallium myeloid cell Present S3-9

Specimen S3-10: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Note: Sequential coronal sections ordered from anterior to posterior.
Structure Cell Type Level Pattern Image Note
TS20: pallium myeloid cell Present S3-10

Specimen S3-11: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Note: Sequential coronal sections ordered from anterior to posterior.
Structure Cell Type Level Pattern Image Note
TS20: pallium myeloid cell Present S3-11

Specimen S3-12: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Note: Sequential coronal sections ordered from anterior to posterior.
Structure Cell Type Level Pattern Image Note
TS20: pallium myeloid cell Present S3-12

Specimen S3-13: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Note: Sequential coronal sections ordered from anterior to posterior.
Structure Cell Type Level Pattern Image Note
TS20: pallium myeloid cell Present S3-13

Specimen S3-14: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Note: Sequential coronal sections ordered from anterior to posterior.
Structure Cell Type Level Pattern Image Note
TS20: pallium myeloid cell Present S3-14

Specimen S3-15: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Note: Sequential coronal sections ordered from anterior to posterior.
Structure Cell Type Level Pattern Image Note
TS20: pallium myeloid cell Present S3-15

Specimen S3-16: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Note: Sequential coronal sections ordered from anterior to posterior.
Structure Cell Type Level Pattern Image Note
TS20: pallium myeloid cell Present S3-16

Specimen S3-17: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Note: Sequential coronal sections ordered from anterior to posterior.
Structure Cell Type Level Pattern Image Note
TS20: pallium myeloid cell Present S3-17

Specimen S3-18: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Note: Sequential coronal sections ordered from anterior to posterior.
Structure Cell Type Level Pattern Image Note
TS20: pallium myeloid cell Present S3-18

Specimen S3-19: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Note: Sequential coronal sections ordered from anterior to posterior.
Structure Cell Type Level Pattern Image Note
TS20: pallium myeloid cell Present S3-19

Specimen S3-20: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Note: Sequential coronal sections ordered from anterior to posterior.
Structure Cell Type Level Pattern Image Note
TS20: pallium myeloid cell Present S3-20

Specimen S3-21: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Note: Sequential coronal sections ordered from anterior to posterior.
Structure Cell Type Level Pattern Image Note
TS20: pallium myeloid cell Present S3-21

Specimen S3-22: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Note: Sequential coronal sections ordered from anterior to posterior.
Structure Cell Type Level Pattern Image Note
TS20: pallium myeloid cell Present S3-22

Specimen S3-23: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Note: Sequential coronal sections ordered from anterior to posterior.
Structure Cell Type Level Pattern Image Note
TS20: pallium myeloid cell Present S3-23

Specimen S3-24: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Note: Sequential coronal sections ordered from anterior to posterior.
Structure Cell Type Level Pattern Image Note
TS20: pallium myeloid cell Present S3-24

Specimen S3-25: embryonic day 12.5; Cx3cr1tm1Litt/Cx3cr1+ (more )
Note: Sequential coronal sections ordered from anterior to posterior.
Structure Cell Type Level Pattern Image Note
TS20: pallium myeloid cell Present S3-25


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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
04/30/2024
MGI 6.23
The Jackson Laboratory