Gene Expression Data
Assay Details
Assay
|
Reference:
|
J:100603
Lin L, et al., Chiasmatic neurons in the ventral diencephalon of mouse embryos--changes in arrangement and heterogeneity in surface antigen expression. Brain Res Dev Brain Res. 2005 Aug 8;158(1-2):1-12
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Assay type:
|
Immunohistochemistry
|
MGI Accession ID:
|
MGI:7287753
|
Gene symbol:
|
Fut4
|
Gene name:
|
fucosyltransferase 4
|
Antibody:
|
anti-SSEA-1
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Detection system:
|
Secondary antibody coupled to fluorescein
|
|
Results
|
Specimen
1A:
embryonic day 9.5
(more )
Specimen
1A:
(close )
Genetic Background:
|
C57BL/6
|
Age:
|
embryonic day 9.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Specimen
1B:
embryonic day 10.5
(more )
Specimen
1B:
(close )
Genetic Background:
|
C57BL/6
|
Age:
|
embryonic day 10.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS17: diencephalon ventricular layer |
Strong |
Regionally restricted |
1B
|
Intense expression restricted to ventricular layer of caudal parts of ventral diencephalon. Weak expression in other diencephalic regions. Weak expression in intraretinal space.
|
TS17: Rathke's pouch |
Weak |
|
1B
|
|
Specimen
1C:
embryonic day 11.5
(more )
Specimen
1C:
(close )
Genetic Background:
|
C57BL/6
|
Age:
|
embryonic day 11.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS19: diencephalon ventricular layer |
Strong |
Regionally restricted |
1C
|
TS19; diencephalon ventricular layer
|
TS19: diencephalon lateral wall |
Present |
Regionally restricted |
1C
|
Expression in subventricular zone of diencephalon in caudal regions of ventral diencephalon - appear to link with expression on ventricular surface.
|
TS19: forebrain |
Present |
Regionally restricted |
1C
|
Intense expression at junction of diencephalon and telencephalon.
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Specimen
1D:
embryonic day 11.5
(more )
Specimen
1D:
(close )
Genetic Background:
|
C57BL/6
|
Age:
|
embryonic day 11.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS19: diencephalon lateral wall |
Strong |
Regionally restricted |
1D
|
Intense expression within subventricular zone of diencephalon.
|
Specimen
1E:
embryonic day 12.5
(more )
Specimen
1E:
(close )
Genetic Background:
|
C57BL/6
|
Age:
|
embryonic day 12.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: diencephalon |
Present |
Regionally restricted |
1E
|
Expression localized in two symmetrical domains in caudal regions of diencephalon.
|
Specimen
1F:
embryonic day 12.5
(more )
Specimen
1F:
(close )
Genetic Background:
|
C57BL/6
|
Age:
|
embryonic day 12.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: diencephalon |
Present |
Regionally restricted |
1F
|
Expression in cell bodies and processes of chiasmatic neurons. Expression in neurons that were multipolar in shape, with a clear soma and a number of thin processes.
|
Specimen
1G:
embryonic day 12.5
(more )
Specimen
1G:
(close )
Genetic Background:
|
C57BL/6
|
Age:
|
embryonic day 12.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: diencephalon |
Present |
Regionally restricted |
1G
|
Expression in cells arranged in inverted V-shaped array, with tip extending rostrally toward midline of ventral diencephalon where future chiam develops.
|
Specimen
1H:
embryonic day 12.5
(more )
Specimen
1H:
(close )
Genetic Background:
|
C57BL/6
|
Age:
|
embryonic day 12.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: diencephalon |
Present |
Regionally restricted |
1H
|
Expression in chiasmatic neurons at central or midline domain of neuronal array. Expression in neurons that were multipolar in shape, with a clear soma and a number of thin processes.
|
Specimen
2A:
embryonic day 13.5
(more )
Specimen
2A:
(close )
Genetic Background:
|
C57BL/6
|
Age:
|
embryonic day 13.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS21: diencephalon |
Present |
Regionally restricted |
2A
|
Expression in caudal region of diencephalon, in a V-shaped array of chiasmatic neurons 300m above the ventra pial surface.
|
Specimen
2B:
embryonic day 13.5
(more )
Specimen
2B:
(close )
Genetic Background:
|
C57BL/6
|
Age:
|
embryonic day 13.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS21: diencephalon |
Present |
Regionally restricted |
2B
|
Expression at bifurcation at lateral region of neuronal array. Clear segregation of cells in lateral regions into a rostral and caudal division.
|
Specimen
2C:
embryonic day 13.5
(more )
Specimen
2C:
(close )
Genetic Background:
|
C57BL/6
|
Age:
|
embryonic day 13.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS21: diencephalon |
Present |
Regionally restricted |
2C
|
Expression in chiasmatic neurons packed as a characteristic V-shaped configuration.
|
Specimen
2D:
embryonic day 14.5
(more )
Specimen
2D:
(close )
Genetic Background:
|
C57BL/6
|
Age:
|
embryonic day 14.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS22: diencephalon |
Present |
Regionally restricted |
2D
|
Expression in ventral diencephalon. Neuronal array straddled midline at level of chiasm and extended to initial segment of optic tract.
|
Specimen
2E:
embryonic day 15.5
(more )
Specimen
2E:
(close )
Genetic Background:
|
C57BL/6
|
Age:
|
embryonic day 15.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS23: diencephalon |
Present |
Regionally restricted |
2E
|
Expression in chiasmatic neurons extending rostrally to appose initial segment of optic tract.
|
Specimen
2F:
embryonic day 15.5
(more )
Specimen
2F:
(close )
Genetic Background:
|
C57BL/6
|
Age:
|
embryonic day 15.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS23: diencephalon |
Present |
Regionally restricted |
2F
|
Expression in lateral extensions from chiasmatic neurons consisting of both cells and processes. Processes form aense plexus at deep border of optic tract. Expression in some processes intruding into optic axon layer.
|
Specimen
3A:
embryonic day 16.5
(more )
Specimen
3A:
(close )
Genetic Background:
|
C57BL/6
|
Age:
|
embryonic day 16.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS24: diencephalon |
Present |
Regionally restricted |
3A
|
Expression largely confined to two cellular domains and to deep border of optic tract.
|
Specimen
3B:
embryonic day 16.5
(more )
Specimen
3B:
(close )
Genetic Background:
|
C57BL/6
|
Age:
|
embryonic day 16.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS24: diencephalon |
Present |
Regionally restricted |
3B
|
Restricted expression at initial segment of optic tract.
|
Specimen
3C:
embryonic day 16.5
(more )
Specimen
3C:
(close )
Genetic Background:
|
C57BL/6
|
Age:
|
embryonic day 16.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS24: diencephalon |
Present |
Regionally restricted |
3C
|
Expression in chiasmatic neurons adjacent to optic tract.
|
Specimen
3D:
embryonic day 16.5
(more )
Specimen
3D:
(close )
Genetic Background:
|
C57BL/6
|
Age:
|
embryonic day 16.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS24: diencephalon |
Present |
Regionally restricted |
3D
|
Expression in group of cells adjacent to midline and along deep border of optic tract.
|
Specimen
3E:
embryonic day 16.5
(more )
Specimen
3E:
(close )
Genetic Background:
|
C57BL/6
|
Age:
|
embryonic day 16.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS24: diencephalon |
Present |
Regionally restricted |
3E
|
Expression localized in cells and processes along optic tract.
|
Specimen
3F:
embryonic day 16.5
(more )
Specimen
3F:
(close )
Genetic Background:
|
C57BL/6
|
Age:
|
embryonic day 16.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS24: diencephalon |
Present |
Regionally restricted |
3F
|
Expression adjacent to midline.
|
Specimen
3G:
embryonic day 18.5
(more )
Specimen
3G:
(close )
Genetic Background:
|
C57BL/6
|
Age:
|
embryonic day 18.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS26: diencephalon |
Present |
Regionally restricted |
3G
|
Expression localized in two distinct domains on each side of diencephalon and along ventricular regions.
|
Specimen
3H:
embryonic day 18.5
(more )
Specimen
3H:
(close )
Genetic Background:
|
C57BL/6
|
Age:
|
embryonic day 18.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS26: diencephalon |
Present |
Regionally restricted |
3H
|
Larger expression domain in rostral region next to midline.
|
Specimen
4B/C:
embryonic day 14.5
(more )
Note: Double labeled: green - SSEA-1 (Fut4); red - Cd44 (assay MGI:7287754).
Specimen
4B/C:
(close )
Genetic Background:
|
C57BL/6
|
Age:
|
embryonic day 14.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Note:
|
Double labeled: green - SSEA-1 (Fut4); red - Cd44 (assay MGI:7287754).
|
Structure |
Level |
Pattern |
Image |
Note |
TS22: diencephalon |
Present |
Regionally restricted |
4B
,
4C
|
Expression in central domain of chiasmatic neurons, co-localized with Cd44, and in lateral regions of array.
|
Specimen
4D:
embryonic day 14.5
(more )
Note: Double labeled: green - SSEA-1 (Fut4); red - Cd44 (assay MGI:7287754).
Specimen
4D:
(close )
Genetic Background:
|
C57BL/6
|
Age:
|
embryonic day 14.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Note:
|
Double labeled: green - SSEA-1 (Fut4); red - Cd44 (assay MGI:7287754).
|
Structure |
Level |
Pattern |
Image |
Note |
TS22: diencephalon |
Present |
Regionally restricted |
4D
|
Co-localization with Cd44 expression in central domain of chiasmatic neurons, extending to chiasmatic midline. Predominate localization in lateral region of chiasmatic neurons apposing optic tract.
|
Specimen
4E:
embryonic day 14.5
(more )
Note: Double labeled: green - SSEA-1 (Fut4); red - Cd44 (assay MGI:7287754).
Specimen
4E:
(close )
Genetic Background:
|
C57BL/6
|
Age:
|
embryonic day 14.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Note:
|
Double labeled: green - SSEA-1 (Fut4); red - Cd44 (assay MGI:7287754).
|
Structure |
Level |
Pattern |
Image |
Note |
TS22: diencephalon |
Present |
Regionally restricted |
4E
|
Co-localization with Cd44 expression at central domain of array.
|
Specimen
4F:
embryonic day 14.5
(more )
Note: Double labeled: green - SSEA-1 (Fut4); red - Cd44 (assay MGI:7287754).
Specimen
4F:
(close )
Genetic Background:
|
C57BL/6
|
Age:
|
embryonic day 14.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Note:
|
Double labeled: green - SSEA-1 (Fut4); red - Cd44 (assay MGI:7287754).
|
Structure |
Level |
Pattern |
Image |
Note |
TS22: diencephalon |
Present |
Regionally restricted |
4F
|
At rostral level of chiasm, co-localization with Cd44 in chiasmatic neurons in central domain extending process into fiber layer at midline.
|
Specimen
4G:
embryonic day 14.5
(more )
Note: Double labeled: green - SSEA-1 (Fut4); red - Cd44 (assay MGI:7287754).
Specimen
4G:
(close )
Genetic Background:
|
C57BL/6
|
Age:
|
embryonic day 14.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Note:
|
Double labeled: green - SSEA-1 (Fut4); red - Cd44 (assay MGI:7287754).
|
Structure |
Level |
Pattern |
Image |
Note |
TS22: diencephalon |
Present |
Regionally restricted |
4G
|
At caudal level of chiasm, where axons enter optic tract, SSEA-1 expression predominates in chiasmatic neurons extending process forming deep plexus along deep border of tract.
|
|