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Gene Expression Data
Assay Details
Assay
Reference: J:100603 Lin L, et al., Chiasmatic neurons in the ventral diencephalon of mouse embryos--changes in arrangement and heterogeneity in surface antigen expression. Brain Res Dev Brain Res. 2005 Aug 8;158(1-2):1-12
Assay type: Immunohistochemistry
MGI Accession ID: MGI:7287753
Gene symbol: Fut4
Gene name: fucosyltransferase 4
Antibody: anti-SSEA-1
Detection system: Secondary antibody coupled to fluorescein
Results
Specimen 1A: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: diencephalon Present Regionally restricted 1A Expression predominantly along ventricular lining of diencephalon, along surface of third ventricle.
TS15: optic recess Present 1A Expression in lumen of optic stalk.
TS15: Rathke's pouch lumen Strong 1A Strong expression in lumen of Rathke's pouch.
TS15: infundibular recess of 3rd ventricle Absent 1A No expression in infundibular stalk.

Specimen 1B: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: diencephalon ventricular layer Strong Regionally restricted 1B Intense expression restricted to ventricular layer of caudal parts of ventral diencephalon. Weak expression in other diencephalic regions. Weak expression in intraretinal space.
TS17: Rathke's pouch Weak 1B

Specimen 1C: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: diencephalon ventricular layer Strong Regionally restricted 1C TS19; diencephalon ventricular layer
TS19: diencephalon lateral wall Present Regionally restricted 1C Expression in subventricular zone of diencephalon in caudal regions of ventral diencephalon - appear to link with expression on ventricular surface.
TS19: forebrain Present Regionally restricted 1C Intense expression at junction of diencephalon and telencephalon.

Specimen 1D: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: diencephalon lateral wall Strong Regionally restricted 1D Intense expression within subventricular zone of diencephalon.

Specimen 1E: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: diencephalon Present Regionally restricted 1E Expression localized in two symmetrical domains in caudal regions of diencephalon.

Specimen 1F: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: diencephalon Present Regionally restricted 1F Expression in cell bodies and processes of chiasmatic neurons. Expression in neurons that were multipolar in shape, with a clear soma and a number of thin processes.

Specimen 1G: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: diencephalon Present Regionally restricted 1G Expression in cells arranged in inverted V-shaped array, with tip extending rostrally toward midline of ventral diencephalon where future chiam develops.

Specimen 1H: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: diencephalon Present Regionally restricted 1H Expression in chiasmatic neurons at central or midline domain of neuronal array. Expression in neurons that were multipolar in shape, with a clear soma and a number of thin processes.

Specimen 2A: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: diencephalon Present Regionally restricted 2A Expression in caudal region of diencephalon, in a V-shaped array of chiasmatic neurons 300m above the ventra pial surface.

Specimen 2B: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: diencephalon Present Regionally restricted 2B Expression at bifurcation at lateral region of neuronal array. Clear segregation of cells in lateral regions into a rostral and caudal division.

Specimen 2C: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: diencephalon Present Regionally restricted 2C Expression in chiasmatic neurons packed as a characteristic V-shaped configuration.

Specimen 2D: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: diencephalon Present Regionally restricted 2D Expression in ventral diencephalon. Neuronal array straddled midline at level of chiasm and extended to initial segment of optic tract.

Specimen 2E: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon Present Regionally restricted 2E Expression in chiasmatic neurons extending rostrally to appose initial segment of optic tract.

Specimen 2F: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon Present Regionally restricted 2F Expression in lateral extensions from chiasmatic neurons consisting of both cells and processes. Processes form aense plexus at deep border of optic tract. Expression in some processes intruding into optic axon layer.

Specimen 3A: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: diencephalon Present Regionally restricted 3A Expression largely confined to two cellular domains and to deep border of optic tract.

Specimen 3B: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: diencephalon Present Regionally restricted 3B Restricted expression at initial segment of optic tract.

Specimen 3C: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: diencephalon Present Regionally restricted 3C Expression in chiasmatic neurons adjacent to optic tract.

Specimen 3D: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: diencephalon Present Regionally restricted 3D Expression in group of cells adjacent to midline and along deep border of optic tract.

Specimen 3E: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: diencephalon Present Regionally restricted 3E Expression localized in cells and processes along optic tract.

Specimen 3F: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: diencephalon Present Regionally restricted 3F Expression adjacent to midline.

Specimen 3G: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: diencephalon Present Regionally restricted 3G Expression localized in two distinct domains on each side of diencephalon and along ventricular regions.

Specimen 3H: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: diencephalon Present Regionally restricted 3H Larger expression domain in rostral region next to midline.

Specimen 4B/C: embryonic day 14.5 (more )
Note: Double labeled: green - SSEA-1 (Fut4); red - Cd44 (assay MGI:7287754).
Structure Level Pattern Image Note
TS22: diencephalon Present Regionally restricted 4B , 4C Expression in central domain of chiasmatic neurons, co-localized with Cd44, and in lateral regions of array.

Specimen 4D: embryonic day 14.5 (more )
Note: Double labeled: green - SSEA-1 (Fut4); red - Cd44 (assay MGI:7287754).
Structure Level Pattern Image Note
TS22: diencephalon Present Regionally restricted 4D Co-localization with Cd44 expression in central domain of chiasmatic neurons, extending to chiasmatic midline. Predominate localization in lateral region of chiasmatic neurons apposing optic tract.

Specimen 4E: embryonic day 14.5 (more )
Note: Double labeled: green - SSEA-1 (Fut4); red - Cd44 (assay MGI:7287754).
Structure Level Pattern Image Note
TS22: diencephalon Present Regionally restricted 4E Co-localization with Cd44 expression at central domain of array.

Specimen 4F: embryonic day 14.5 (more )
Note: Double labeled: green - SSEA-1 (Fut4); red - Cd44 (assay MGI:7287754).
Structure Level Pattern Image Note
TS22: diencephalon Present Regionally restricted 4F At rostral level of chiasm, co-localization with Cd44 in chiasmatic neurons in central domain extending process into fiber layer at midline.

Specimen 4G: embryonic day 14.5 (more )
Note: Double labeled: green - SSEA-1 (Fut4); red - Cd44 (assay MGI:7287754).
Structure Level Pattern Image Note
TS22: diencephalon Present Regionally restricted 4G At caudal level of chiasm, where axons enter optic tract, SSEA-1 expression predominates in chiasmatic neurons extending process forming deep plexus along deep border of tract.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
05/14/2024
MGI 6.23
The Jackson Laboratory