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Gene Expression Data
Assay Details
Assay
Reference: J:321365 Knoedler JR, et al., A functional cellular framework for sex and estrous cycle-dependent gene expression and behavior. Cell. 2022 Feb 17;185(4):654-671.e22
Assay type: RNA in situ
MGI Accession ID: MGI:6886064
Gene symbol: Esr1
Gene name: estrogen receptor 1 (alpha)
Probe: Esr1 probe2
Probe preparation: Antisense labelled with Alexa Fluor
Visualized with: Fluorescence
Results
Specimen 3C - Nrip1: postnatal adult (more )
Note: Double labeled: red - Esr1; green - Nrip1 (assay MGI:6886031)
Structure Cell Type Level Pattern Image Note
TS28: principal nucleus neuron Present 3C Nrip1 - Merge , 3C Nrip1 - Esr1 Expression is seen in the principal component of the bed nucleus of the stria terminalis (BNSTpr).
Specimen 3C - Pgr15l: postnatal adult (more )
Note: Double labeled: red - Esr1; green - Pgr15l (assay MGI:6886053)
Structure Cell Type Level Pattern Image Note
TS28: principal nucleus neuron Present 3C Pgr15l - Esr1 , 3C Pgr15l - Merge Expression is seen in the principal component of the bed nucleus of the stria terminalis (BNSTpr).
Specimen 3C - Col25a1: postnatal adult (more )
Note: Double labeled: red - Esr1; green - Col25a1 (assay MGI:6886073)
Structure Cell Type Level Pattern Image Note
TS28: medial amygdaloid nucleus neuron Present 3C Col25a1 - Esr1 , 3C Col25a1 - Merge Expression is seen in the medial amygdala (MeA).
Specimen 3C - Cckar: postnatal adult (more )
Note: Double labeled: red - Esr1; green - Cckar (assay MGI:6886052)
Structure Cell Type Level Pattern Image Note
TS28: medial amygdaloid nucleus neuron Present 3C Cckar - Esr1 , 3C Cckar - Merge Expression is seen in the medial amygdala (MeA).
Specimen 3C - Crim1: postnatal adult (more )
Note: Double labeled: red - Esr1; green - Crim1 (assay MGI:6886028)
Structure Cell Type Level Pattern Image Note
TS28: preoptic area neuron Present 3C Crim1 - Esr1 , 3C Crim1 - Merge Expression is seen in the preoptic hypothalamus (POA).
Specimen 3C - Pappa: postnatal adult (more )
Note: Double labeled: red - Esr1; green - Pappa (assay MGI:6886027)
Structure Cell Type Level Pattern Image Note
TS28: preoptic area neuron Present 3C Pappa - Esr1 , 3C Pappa - Merge Expression is seen in the preoptic hypothalamus (POA).
Specimen 3C - PR: postnatal adult (more )
Note: Double labeled: red - Esr1; green - Pgr (assay MGI:6886072)
Structure Cell Type Level Pattern Image Note
TS28: ventromedial hypothalamic nucleus neuron Present Regionally restricted 3C PR - Merge , 3C PR - Esr1 Expression is seen in the ventromedial hypothalamus ventrolateralis (VMHvl).
Specimen 3C - Abtb2: postnatal adult (more )
Note: Double labeled: red - Esr1; green - Abtb2 (assay MGI:6886048)
Structure Cell Type Level Pattern Image Note
TS28: ventromedial hypothalamic nucleus neuron Present Regionally restricted 3C Abtb2 - Merge , 3C Abtb2 - Esr1 Expression is seen in the ventromedial hypothalamus ventrolateralis (VMHvl).
Specimen 6B: postnatal adult (more )
Note: Double labeled: green - Esr1; red- Tac1 (assay MGI:6886029)
Structure Cell Type Level Pattern Image Note
TS28: principal nucleus neuron Present 6B Merge , 6B Esr1 Expression is seen in the principal component of the bed nucleus of the stria terminalis (BNSTpr).
Specimen 7C: postnatal adult (more )
Note: Double labeled: green - Esr1; red - Cckar (assay MGI:6886052)
Structure Level Pattern Image Note
TS28: ventromedial hypothalamic nucleus Present Regionally restricted 7C Merge , 7C Esr1 Expression is seen in the ventromedial hypothalamus ventrolateralis (VMHvl).
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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12/30/2025
MGI 6.24 		The Jackson Laboratory