Gene Expression Data
Assay Details
Assay
|
Reference:
|
J:43443
Taniguchi M, et al., Disruption of semaphorin III/D gene causes severe abnormality in peripheral nerve projection. Neuron. 1997 Sep;19(3):519-30
|
Assay type:
|
Immunohistochemistry
|
MGI Accession ID:
|
MGI:6761855
|
Gene symbol:
|
Nefm
|
Gene name:
|
neurofilament, medium polypeptide
|
|
Results
|
Specimen
3A:
embryonic day 10.5
(more )
Specimen
3A:
(close )
Genetic Background:
|
involves: C57BL/6 * CBA
|
Age:
|
embryonic day 10.5
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Specimen
3B:
(close )
Genetic Background:
|
involves: C57BL/6 * CBA
|
Mutant Allele(s):
|
Sema3atm1.1Tyag/Sema3atm1.1Tyag
|
Age:
|
embryonic day 10.5
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Structure |
Level |
Pattern |
Image |
Note |
TS17: cranial nerve |
Present |
|
3B
|
In this mutant nerves extend in the correct direction to their targets but defasciculate and occupy a wider area compared to wild-type embryos. No abnormality was seen in the oculomotor nerve.
|
Specimen
3C:
embryonic day 10.5
(more )
Specimen
3C:
(close )
Genetic Background:
|
involves: C57BL/6 * CBA
|
Age:
|
embryonic day 10.5
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Specimen
3D:
(close )
Genetic Background:
|
involves: C57BL/6 * CBA
|
Mutant Allele(s):
|
Sema3atm1.1Tyag/Sema3atm1.1Tyag
|
Age:
|
embryonic day 10.5
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Structure |
Level |
Pattern |
Image |
Note |
TS17: cranial nerve |
Present |
|
3D
|
In this mutant nerves extend in the correct direction to their targets but defasciculate and occupy a wider area compared to wild-type embryos. No abnormality was seen in the oculomotor nerve.
|
Specimen
3E:
embryonic day 10.5
(more )
Specimen
3E:
(close )
Genetic Background:
|
involves: C57BL/6 * CBA
|
Age:
|
embryonic day 10.5
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Specimen
3F:
(close )
Genetic Background:
|
involves: C57BL/6 * CBA
|
Mutant Allele(s):
|
Sema3atm1.1Tyag/Sema3atm1.1Tyag
|
Age:
|
embryonic day 10.5
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Structure |
Level |
Pattern |
Image |
Note |
TS17: cranial nerve |
Present |
|
3F
|
In this mutant the terminals of the vagus and accessory nerves spread out compared to wild-type embryos.
|
Specimen
4A:
embryonic day 12.5
(more )
Specimen
4A:
(close )
Genetic Background:
|
involves: C57BL/6 * CBA
|
Age:
|
embryonic day 12.5
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: face |
Present |
|
4A
|
Expression is in the trigeminal nerve which innervates a region around the eye, extending into the maxillary process and muzzle.
|
TS20: trigeminal nerve |
Present |
|
4A
|
Expression is in the trigeminal nerve which innervates a region around the eye, extending into the maxillary process and muzzle.
|
TS20: cornea |
Present |
Regionally restricted |
4A
|
Expression is in the trigeminal, sympathetic, and ciliary nerves at the periphery of the cornea.
|
TS20: nerve |
Present |
Regionally restricted |
4A
|
Expression is in the trigeminal, sympathetic, and ciliary nerves at the periphery of the cornea.
|
TS20: lens primordium |
Absent |
|
4A
|
|
Specimen
4B:
(close )
Genetic Background:
|
involves: C57BL/6 * CBA
|
Mutant Allele(s):
|
Sema3atm1.1Tyag/Sema3atm1.1Tyag
|
Age:
|
embryonic day 12.5
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: face |
Present |
Regionally restricted |
4B
|
This mutant has abnormalities in the projection patterns, it extends further and occupied twice as much area as compared to wild-type embryos.
|
TS20: trigeminal nerve |
Present |
Regionally restricted |
4B
|
This mutant has abnormalities in the projection patterns, it extends further and occupied twice as much area as compared to wild-type embryos.
|
TS20: cornea |
Present |
Regionally restricted |
4B
|
This mutant has abnormalities in the projection patterns in the cornea extending over the lens.
|
TS20: lens primordium |
Present |
Regionally restricted |
4B
|
This mutant has abnormalities in the projection patterns in the cornea extending over the lens.
|
TS20: nerve |
Present |
Regionally restricted |
4B
|
This mutant has abnormalities in the projection patterns in the cornea extending over the lens.
|
Specimen
4C:
embryonic day 13.0; Sema3atm1.3Tyag/Sema3a +
(more )
Note: Double labeled: brown - Nefm; blue - Sema3a reporter (assay MGI:6761850).
Specimen
4C:
(close )
Genetic Background:
|
involves: C57BL/6 * CBA
|
Mutant Allele(s):
|
Sema3atm1.3Tyag/Sema3a+
|
Age:
|
embryonic day 13.0
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
Double labeled: brown - Nefm; blue - Sema3a reporter (assay MGI:6761850).
|
Structure |
Level |
Pattern |
Image |
Note |
TS21: face |
Present |
Regionally restricted |
4C
|
Expression is in the trigeminal nerve which innervates a region around the eye, extending into the maxillary process and muzzle.
|
TS21: trigeminal nerve |
Present |
Regionally restricted |
4C
|
Expression is in the trigeminal nerve which innervates a region around the eye, extending into the maxillary process and muzzle.
|
Specimen
4D:
(close )
Genetic Background:
|
involves: C57BL/6 * CBA
|
Mutant Allele(s):
|
Sema3atm1.3Tyag/Sema3atm1.3Tyag
|
Age:
|
embryonic day 13.0
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
Double labeled: brown - Nefm; blue - Sema3a reporter (assay MGI:6761850).
|
Structure |
Level |
Pattern |
Image |
Note |
TS21: face |
Present |
Regionally restricted |
4D
|
In this mutant expression in trigeminal terminals extended to certain areas in the ventrocaudal quadrant of the face.
|
TS21: trigeminal nerve |
Present |
Regionally restricted |
4D
|
In this mutant expression in trigeminal terminals extended to certain areas in the ventrocaudal quadrant of the face.
|
Specimen
4E:
(close )
Genetic Background:
|
involves: C57BL/6 * CBA
|
Mutant Allele(s):
|
Sema3atm1.1Tyag/Sema3atm1.1Tyag
|
Age:
|
embryonic day 12.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: eye |
Present |
Regionally restricted |
4E
|
Expression is in nerve fibers that enter the tunica fibrosa bulbi.
|
TS20: nerve |
Present |
Regionally restricted |
4E
|
Expression is in nerve fibers that enter the tunica fibrosa bulbi.
|
Specimen
4F:
(close )
Genetic Background:
|
involves: C57BL/6 * CBA
|
Mutant Allele(s):
|
Sema3atm1.1Tyag/Sema3atm1.1Tyag
|
Age:
|
embryonic day 12.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: lens primordium |
Present |
Regionally restricted |
4F
|
Expression is in nerve fibers that enter the lens.
|
TS20: nerve |
Present |
Regionally restricted |
4F
|
Expression is in nerve fibers that enter the lens.
|
Specimen
4G:
embryonic day 12.5
(more )
Specimen
4G:
(close )
Genetic Background:
|
involves: C57BL/6 * CBA
|
Age:
|
embryonic day 12.5
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Specimen
4H:
(close )
Genetic Background:
|
involves: C57BL/6 * CBA
|
Mutant Allele(s):
|
Sema3atm1.1Tyag/Sema3atm1.1Tyag
|
Age:
|
embryonic day 12.5
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: forelimb nerve |
Present |
|
4H
|
In this mutant there are more axon branches than in controls, and reach the base of the handplate.
|
Specimen
4J:
(close )
Genetic Background:
|
involves: C57BL/6 * CBA
|
Mutant Allele(s):
|
Sema3atm1.3Tyag/Sema3atm1.3Tyag
|
Age:
|
embryonic day 13.0
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
Double labeled: brown - Nefm; blue - Sema3a reporter (assay MGI:6761850).
|
Structure |
Level |
Pattern |
Image |
Note |
TS21: forelimb nerve |
Present |
|
4J
|
In this mutant there are more axon branches than in controls, and reach the base of the handplate.
|
Specimen
4K:
embryonic day 12.5
(more )
Specimen
4K:
(close )
Genetic Background:
|
involves: C57BL/6 * CBA
|
Age:
|
embryonic day 12.5
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: spinal nerve |
Present |
|
4K
|
Expression is in spinal nerve projection in the dorsal muscles and stop at the sclerotome boundary.
|
Specimen
4L:
(close )
Genetic Background:
|
involves: C57BL/6 * CBA
|
Mutant Allele(s):
|
Sema3atm1.1Tyag/Sema3atm1.1Tyag
|
Age:
|
embryonic day 12.5
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: spinal nerve |
Present |
|
4L
|
In this mutant expression in spinal nerves did not stop at the sclerotome boundary and crossed the dorsal midline.
|
Specimen
4M:
embryonic day 13.0; Sema3atm1.3Tyag/Sema3a +
(more )
Note: Double labeled: brown - Nefm; blue - Sema3a reporter (assay MGI:6761850).
Specimen
4M:
(close )
Genetic Background:
|
involves: C57BL/6 * CBA
|
Mutant Allele(s):
|
Sema3atm1.3Tyag/Sema3a+
|
Age:
|
embryonic day 13.0
|
Sex:
|
Not Specified
|
Type:
|
whole mount
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
Double labeled: brown - Nefm; blue - Sema3a reporter (assay MGI:6761850).
|
Structure |
Level |
Pattern |
Image |
Note |
TS21: spinal nerve |
Present |
|
4M
|
Expression is in spinal nerve projection in the dorsal muscles and stop at the sclerotome boundary.
|
Specimen
5A:
embryonic day 12.5
(more )
Specimen
5A:
(close )
Genetic Background:
|
involves: C57BL/6 * CBA
|
Age:
|
embryonic day 12.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Specimen
5B:
(close )
Genetic Background:
|
involves: C57BL/6 * CBA
|
Mutant Allele(s):
|
Sema3atm1.1Tyag/Sema3atm1.1Tyag
|
Age:
|
embryonic day 12.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Specimen
5C:
embryonic day 12.5
(more )
Specimen
5C:
(close )
Genetic Background:
|
involves: C57BL/6 * CBA
|
Age:
|
embryonic day 12.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Specimen
5D:
(close )
Genetic Background:
|
involves: C57BL/6 * CBA
|
Mutant Allele(s):
|
Sema3atm1.1Tyag/Sema3atm1.1Tyag
|
Age:
|
embryonic day 12.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: sympathetic ganglion |
Present |
|
5D
|
This mutant has a disrupted shape of sympathetic chains with cell bodies scattered in clumps over a broader medial-lateral area.
|
|