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Gene Expression Data
Assay Details
Assay
Reference: J:170372 Murko C, et al., Expression of class I histone deacetylases during chick and mouse development. Int J Dev Biol. 2010;54(10):1527-37
Assay type: RNA in situ
MGI Accession ID: MGI:6438068
Gene symbol: Hdac1
Gene name: histone deacetylase 1
Probe: Hdac1 cDNA1
Probe preparation: Antisense labelled with digoxigenin RNA
Results
Specimen 5A: embryonic day 10.0 (more )
Structure Level Pattern Image Note
TS16: branchial arch Strong 5A
TS16: otocyst Strong 5A
TS16: telencephalon Strong 5A
TS16: diencephalon Present 5A
TS16: future midbrain Present 5A
TS16: future hindbrain Present Regionally restricted 5A Expression is in the rhombic fossa and is weak in the myelencephalon.
TS16: future spinal cord Present Regionally restricted 5A Expression is in the caudal region at the site of neural tube closure.
TS16: forelimb bud Weak 5A
TS16: head mesenchyme Weak 5A
TS16: hindlimb bud Weak 5A

Specimen 5B: embryonic day 10.0 (more )
Structure Level Pattern Image Note
TS16: branchial arch Strong 5B
TS16: otocyst Strong 5B
TS16: telencephalon Strong 5B
TS16: diencephalon Present 5B
TS16: future midbrain Present 5B
TS16: future hindbrain Present Regionally restricted 5B Expression is in the rhombic fossa and is weak in the myelencephalon.
TS16: future spinal cord Present Regionally restricted 5B Expression is in the caudal region at the site of neural tube closure.
TS16: forelimb bud Weak 5B
TS16: head mesenchyme Weak 5B
TS16: hindlimb bud Weak 5B

Specimen 5C: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: branchial arch Strong 5C
TS19: diencephalon Strong 5C
TS19: forelimb bud Strong 5C
TS19: hindlimb bud Strong 5C
TS19: metencephalon Strong 5C
TS19: midbrain Strong 5C
TS19: otocyst Strong 5C
TS19: telencephalon Strong 5C
TS19: hindbrain Strong Regionally restricted 5C Expression is in the rhombic fossa.
TS19: myelencephalon Weak Regionally restricted 5C Expression extends caudally as two faint stripes adjacent to the midline of the spinal cord.
TS19: neural tube Present Regionally restricted 5C Expression is stronger in the caudal region at the site of neural tube closure.
TS19: dorsal root ganglion Weak 5C
TS19: head mesenchyme Weak 5C
TS19: liver Weak 5C
TS19: somite Weak 5C

Specimen 5D: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: diencephalon Strong 5D
TS19: forelimb bud Strong 5D
TS19: hindlimb bud Strong 5D
TS19: metencephalon Strong 5D
TS19: otocyst Strong 5D
TS19: telencephalon Strong 5D
TS19: hindbrain Strong Regionally restricted 5D Expression is in the rhombic fossa.
TS19: myelencephalon Weak Regionally restricted 5D Expression extends caudally as two faint stripes adjacent to the midline of the spinal cord.
TS19: neural tube Present Regionally restricted 5D Expression is stronger in the caudal region at the site of neural tube closure.
TS19: dorsal root ganglion Weak 5D
TS19: head mesenchyme Weak 5D
TS19: somite Weak 5D

Specimen 5E: embryonic day 13.0 (more )
Structure Level Pattern Image Note
TS21: cerebellum Strong 5E
TS21: diencephalon Strong 5E
TS21: midbrain Strong 5E
TS21: telencephalon Strong 5E
TS21: hindbrain Strong Regionally restricted 5E Expression is in the cerebellum and is absent in the rhombic fossa.
TS21: spinal cord Present Regionally restricted 5E Expression extends caudally as two stripes adjacent to the midline of the spinal cord.
TS21: oral region Present Regionally restricted 5E Expression is in the mandibular and maxillary processes.
TS21: dorsal root ganglion Present 5E
TS21: eye Present 5E
TS21: eyelid Present 5E
TS21: genital tubercle Present 5E
TS21: philtrum Present 5E
TS21: somite Present 5E
TS21: vibrissa Present 5E
TS21: forelimb mesenchyme Present Regionally restricted 5E Expression is concentrated around the skeletal elements.
TS21: hindlimb mesenchyme Present Regionally restricted 5E Expression is concentrated around the skeletal elements.
TS21: inner ear Present Regionally restricted 5E Expression is in the otic vesicles.
TS21: forelimb cartilage condensation Absent 5E
TS21: hindlimb cartilage condensation Absent 5E

Specimen 5F: embryonic day 13.0 (more )
Structure Level Pattern Image Note
TS21: cerebellum Strong 5F
TS21: midbrain Strong 5F
TS21: hindbrain Strong Regionally restricted 5F Expression is in the cerebellum and is absent in the rhombic fossa.
TS21: spinal cord Present Regionally restricted 5F Expression extends caudally as two stripes adjacent to the midline of the spinal cord.

Specimen 5X: embryonic day 11.5 (more )
Note: Vibratome section.
Structure Level Pattern Image Note
TS19: neural tube ventricular layer Present Regionally restricted 5X Expression is in the ependyma layer.

Specimen 6B: embryonic day 13.0 (more )
Structure Level Pattern Image Note
TS21: cerebellum Strong 6B
TS21: cerebral cortex mantle layer Strong 6B
TS21: hindbrain Strong Regionally restricted 6B Expression is in the cerebellum and is absent in the rhombic fossa.
TS21: choroid plexus Absent 6B

Specimen 6C: embryonic day 13.0 (more )
Structure Level Pattern Image Note
TS21: eyelid Present 6C
TS21: retina Present 6C

Specimen 6D: embryonic day 13.0 (more )
Structure Level Pattern Image Note
TS21: cerebral cortex mantle layer Present 6D

Specimen 6I: embryonic day 13.0 (more )
Structure Level Pattern Image Note
TS21: nasal cavity Present 6I
TS21: tooth Present 6I
TS21: vibrissa Present 6I

Specimen 6M: embryonic day 13.0 (more )
Structure Level Pattern Image Note
TS21: metanephros Strong 6M
TS21: dorsal root ganglion Present 6M
TS21: rib cartilage condensation Present 6M
TS21: vertebral cartilage condensation Present 6M

Specimen 6Q: embryonic day 13.0 (more )
Structure Level Pattern Image Note
TS21: metanephros Strong 6Q
TS21: adrenal gland Present 6Q
TS21: gonad Present 6Q

Specimen 6R: embryonic day 13.0 (more )
Structure Level Pattern Image Note
TS21: lung Strong 6R
TS21: liver Present Regionally restricted 6R Expression is in the capsule and the subcapsular region.
TS21: cardiac muscle tissue Absent 6R

Specimen not shown: embryonic day 13.0 (more )
Structure Level Pattern Image Note
TS21: outflow tract Present


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory