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Gene Expression Data
Assay Details
Assay
Reference: J:281432 Alharatani R, et al., Expression of the guanine nucleotide exchange factor, RAPGEF5, during mouse and human embryogenesis. Gene Expr Patterns. 2019 Jun 1;34:119057
Assay type: RNA in situ
MGI Accession ID: MGI:6385309
Gene symbol: Rapgef5
Gene name: Rap guanine nucleotide exchange factor (GEF) 5
Probe: 6494175
Probe preparation: Antisense labelled with digoxigenin RNA
Results
Specimen 2A Lateral: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: bulbus cordis Strong 2A Lateral magnified , 2A Lateral
TS15: future forebrain Strong 2A Lateral magnified , 2A Lateral
TS15: future hindbrain Strong 2A Lateral magnified , 2A Lateral
TS15: future midbrain Strong 2A Lateral magnified , 2A Lateral
TS15: midbrain-hindbrain junction Strong 2A Lateral magnified , 2A Lateral
TS15: 1st branchial arch mandibular component Present 2A Lateral magnified , 2A Lateral
TS15: fronto-nasal process Present 2A Lateral magnified , 2A Lateral
TS15: trigeminal preganglion Present 2A Lateral magnified , 2A Lateral
TS15: 1st branchial arch maxillary component Present Regionally restricted 2A Lateral , 2A Lateral magnified
TS15: forelimb bud Present 2A Lateral
TS15: dorsal aorta Strong 2A Lateral
TS15: nose Present Regionally restricted 2A Lateral , 2A Lateral magnified Expression is in the nasal pit.
TS15: otocyst Weak Regionally restricted 2A Lateral magnified , 2A Lateral Expression is in the rostral domain.
TS15: 2nd branchial arch Present Regionally restricted 2A Lateral , 2A Lateral magnified Expression is in the proximal regions.
TS15: 3rd branchial arch Present Regionally restricted 2A Lateral , 2A Lateral magnified Expression is in the proximal regions.
TS15: somite Weak 2A Lateral
TS15: optic cup Weak 2A Lateral , 2A Lateral magnified
TS15: aortic sac Absent 2A Lateral magnified , 2A Lateral

Specimen 2A Frontal: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: future forebrain Strong 2A Frontal
TS15: future hindbrain Strong 2A Frontal
TS15: future midbrain Strong 2A Frontal
TS15: midbrain-hindbrain junction Strong 2A Frontal
TS15: forelimb bud Present 2A Frontal
TS15: fronto-nasal process Present 2A Frontal
TS15: heart Present 2A Frontal

Specimen 2A Dorsal: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: future forebrain Strong 2A Dorsal
TS15: future hindbrain Strong 2A Dorsal
TS15: future midbrain Strong 2A Dorsal
TS15: midbrain-hindbrain junction Strong 2A Dorsal
TS15: forelimb bud Present 2A Dorsal

Specimen 2B Lateral: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: aortic sac Strong 2B Lateral , 2B Lateral magnified
TS17: forebrain Strong 2B Lateral , 2B Lateral magnified
TS17: heart Strong 2B Lateral , 2B Lateral magnified
TS17: hindbrain Strong 2B Lateral , 2B Lateral magnified
TS17: midbrain Strong 2B Lateral , 2B Lateral magnified
TS17: neural tube Strong 2B Lateral , 2B Lateral magnified
TS17: fronto-nasal process Present 2B Lateral magnified , 2B Lateral
TS17: latero-nasal process Present 2B Lateral magnified , 2B Lateral
TS17: nasal pit Present 2B Lateral magnified , 2B Lateral
TS17: trigeminal ganglion Present 2B Lateral magnified , 2B Lateral
TS17: 1st branchial arch Present Regionally restricted 2B Lateral , 2B Lateral magnified Expression is in the proximal regions.
TS17: 2nd branchial arch Present Regionally restricted 2B Lateral , 2B Lateral magnified Expression is in the proximal regions.
TS17: 3rd branchial arch Present Regionally restricted 2B Lateral , 2B Lateral magnified Expression is in the proximal regions.
TS17: 4th branchial arch Present Regionally restricted 2B Lateral , 2B Lateral magnified Expression is in the proximal regions.
TS17: dorsal aorta Present 2B Lateral
TS17: forelimb bud Present 2B Lateral
TS17: midbrain-hindbrain junction Present 2B Lateral
TS17: otocyst Present Regionally restricted 2B Lateral , 2B Lateral magnified Expression is in the rostral domain.

Specimen 2B Frontal: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: forebrain Present 2B Frontal
TS17: heart Present 2B Frontal
TS17: midbrain Present 2B Frontal
TS17: midbrain-hindbrain junction Present 2B Frontal
TS17: neural tube Present 2B Frontal

Specimen 2B Dorsal: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: forelimb bud Present 2B Dorsal
TS17: midbrain Present 2B Dorsal
TS17: neural tube Present 2B Dorsal

Specimen 3A: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: diencephalon Strong 3A
TS20: brain Present 3A
TS20: facial ganglion Present 3A

Specimen 3B: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: diencephalon Strong 3B
TS20: trigeminal ganglion Strong 3B
TS20: brain Present 3B
TS20: facial ganglion Present 3B

Specimen 3C: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: diencephalon Strong 3C
TS20: trigeminal ganglion Strong 3C
TS20: brain Present 3C
TS20: facial ganglion Present 3C

Specimen 3D: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: oral epithelium Present 3D
TS20: palatal shelf epithelium Present 3D
TS20: tongue epithelium Present 3D

Specimen 3E: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: oral epithelium Present 3E
TS20: dental placode Present Regionally restricted 3E Expression is in the early dental lamina of the upper jaw.
TS20: tooth bud Present Regionally restricted 3E Expression is in the early dental lamina of the upper jaw.

Specimen 3F: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: ventricle cardiac muscle Present 3F
TS20: ventricle endocardial lining Present 3F

Specimen 3G: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: brain Strong 3G

Specimen 3H: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: brain Strong 3H

Specimen 3I: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: brain Strong 3I
TS21: trigeminal ganglion Strong 3I

Specimen 3J: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: oral epithelium Present 3J
TS21: palatal shelf epithelium Present 3J
TS21: salivary gland epithelium Present 3J
TS21: tongue epithelium Present 3J

Specimen 3K: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: dental lamina Present 3K
TS21: tooth bud Present 3K
TS21: tooth mesenchyme Present Regionally restricted 3K Expression is in the ectomesenchymal dental papilla.

Specimen 3L: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: ventricle cardiac muscle Present 3L
TS21: ventricle endocardial lining Present 3L

Specimen 4A: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: brain Present 4A
TS22: cerebral cortex Present 4A
TS22: diencephalon Present 4A
TS22: trigeminal ganglion Present 4A

Specimen 4B: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: brain Present 4B
TS22: cerebral cortex Present 4B
TS22: diencephalon Present 4B
TS22: trigeminal ganglion Present 4B

Specimen 4C: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: brain Present 4C
TS22: cerebral cortex Present 4C
TS22: diencephalon Present 4C

Specimen 4D: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: palatal shelf epithelium Present Regionally restricted 4D Expression is in the medial edge epithelium.
TS22: tongue epithelium Present 4D
TS22: oral epithelium Present Regionally restricted 4D Expression is in the floor of the oral cavity.

Specimen 4E: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: trigeminal ganglion Present 4E

Specimen 4F: embryonic day 14.5 (more )
Note: Early cap stage of tooth development.
Structure Level Pattern Image Note
TS22: cap stage tooth Present Diffuse 4F
TS22: dental lamina Present Diffuse 4F
TS22: dental papilla Present Diffuse 4F
TS22: tooth epithelium Present Diffuse 4F

Specimen 4G: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: salivary gland epithelium Present Regionally restricted 4G Expression is in the branching epithelium.

Specimen 4H: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: endocardial lining Strong 4H
TS22: atrium cardiac muscle Present 4H
TS22: interventricular septum muscular part Present 4H
TS22: ventricle cardiac muscle Present 4H

Specimen 4I: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex Strong 4I
TS23: diencephalon Strong 4I
TS23: brain Present 4I

Specimen 4J: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex Strong 4J
TS23: diencephalon Strong 4J
TS23: brain Present 4J

Specimen 4K: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex Strong 4K
TS23: diencephalon Strong 4K
TS23: brain Present 4K

Specimen 4L: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: tongue mesenchyme Present 4L
TS23: oral epithelium Present Regionally restricted 4L Expression is in the floor of the oral cavity.

Specimen 4M: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: lower jaw incisor Strong 4M

Specimen 4N: embryonic day 15.5 (more )
Note: Late cap stage of tooth development.
Structure Level Pattern Image Note
TS23: cap stage tooth Present Diffuse 4N
TS23: dental lamina Present Diffuse 4N
TS23: dental papilla Present Diffuse 4N
TS23: tooth epithelium Present Diffuse 4N

Specimen 4O: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: salivary gland Present Regionally restricted 4O Expression is in the basal cytoplasm and secretory vesicles of the serous acini and in the interlobular excretory ducts.

Specimen 4P: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: endocardial lining Strong 4P
TS23: atrium cardiac muscle Present 4P
TS23: interventricular septum muscular part Present 4P
TS23: ventricle cardiac muscle Present 4P

Specimen 4Q: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: main olfactory bulb Present Regionally restricted 4Q Expression is in cells lining the walls of the olfactory bulbs bilaterally.
TS24: tongue epithelium Present 4Q
TS24: oral epithelium Present Regionally restricted 4Q Expression is in the floor of the oral cavity.

Specimen 4R: embryonic day 16.5 (more )
Note: Bell stage of tooth development.
Structure Level Pattern Image Note
TS24: bell stage tooth Present 4R
TS24: dental lamina Present 4R
TS24: dental papilla Present 4R
TS24: enamel knot Present 4R
TS24: inner enamel epithelium Present 4R
TS24: outer enamel epithelium Present 4R

Specimen 4S: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: salivary gland Present Regionally restricted 4S Expression is in the basal cytoplasm and secretory vesicles of the serous acini and in the interlobular excretory ducts.

Specimen 5A: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: lens anterior epithelium Present 5A
TS22: neural retina Present 5A
TS22: cornea epithelium Present Regionally restricted 5A Expression is in the anterior and posterior corneal epithelium.

Specimen 5B: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: lens fiber Present Regionally restricted 5B Expression is in the medial primary fiber cells and proximal secondary fiber cells.
TS24: pigmented retinal epithelium Present 5B
TS24: retina inner nuclear layer Present 5B
TS24: retina outer nuclear layer Present 5B
TS24: neural retina Present Regionally restricted 5B Expression is in the inner plexiform layer.

Specimen 5C: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: adenohypophysis Present 5C
TS21: adenohypophysis pars intermedia Present 5C
TS21: neurohypophysis Present 5C

Specimen 5D: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: adenohypophysis Present 5D
TS23: adenohypophysis pars intermedia Present 5D
TS23: neurohypophysis Present 5D

Specimen 5E: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: facial muscle Present Regionally restricted 5E Expression is in the connective tissue of the lateral pterygoid muscle.

Specimen 5F: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: pericardium Present 5F

Specimen 5G: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: genioglossus Present 5G
TS23: hyoglossus Present 5G
TS23: mylohyoid Present 5G
TS23: tongue extrinsic muscle Present 5G
TS23: tongue intrinsic muscle Present 5G
TS23: pharynx skeletal muscle Present Regionally restricted 5G Expression is in the geniohyoid muscle.

Specimen 5H: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: genioglossus Present 5H
TS24: hyoglossus Present 5H
TS24: mylohyoid Present 5H
TS24: tongue extrinsic muscle Present 5H
TS24: tongue intrinsic muscle Present 5H
TS24: pharynx skeletal muscle Present Regionally restricted 5H Expression is in the geniohyoid muscle.

Specimen 5I: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: spinal cord mantle layer Present Regionally restricted 5I Expression is in the middle of the caudal neural tube.
TS20: dorsal root ganglion Present 5I
TS20: spinal cord marginal layer Absent 5I

Specimen 5J: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: dorsal root ganglion Present 5J
TS21: spinal cord mantle layer Present 5J
TS21: spinal cord ventricular layer Present 5J
TS21: spinal cord marginal layer Absent 5J

Specimen 5K: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: alar columns Present 5K
TS22: basal columns Present 5K
TS22: dorsal root ganglion Present 5K
TS22: spinal cord mantle layer Present 5K
TS22: spinal cord ventricular layer Present 5K
TS22: spinal cord marginal layer Absent 5K

Specimen 5L: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: alar columns Present Regionally restricted 5L Expression is in part of the middle mantle zone.
TS23: basal columns Present Regionally restricted 5L Expression is in part of the middle mantle zone.
TS23: spinal cord mantle layer Present Regionally restricted 5L Expression is in part of the middle mantle zone.
TS23: dorsal root ganglion Present 5L
TS23: spinal cord marginal layer Absent 5L

Specimen 5M: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: pretubular aggregate Present 5M , 5M'
TS20: mesenchyme of metanephros Present Regionally restricted 5M , 5M' Expression is in the condensing mesenchyme.
TS20: early nephron Present Regionally restricted 5M' , 5M Expression is in the metanephric glomerulus in the uretric bud.
TS20: sympathetic ganglion Strong Regionally restricted 5M Expression is in the preaortic abdominal sympathetic ganglia.

Specimen 5N: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: pretubular aggregate Present 5N' , 5N
TS21: mesenchyme of metanephros Present Regionally restricted 5N' , 5N Expression is in the condensing mesenchyme.
TS21: early nephron Present Regionally restricted 5N , 5N' Expression is in the metanephric glomerulus in the uretric bud.

Specimen 5O: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: pretubular aggregate Present 5O , 5O'
TS22: mesenchyme of metanephros Present Regionally restricted 5O , 5O' Expression is in the condensing mesenchyme.
TS22: maturing glomerular tuft Present Regionally restricted 5O , 5O' Expression is in the metanephric glomerulus in the uretric bud.
TS22: sympathetic ganglion Strong Regionally restricted 5O Expression is in the preaortic abdominal sympathetic ganglia.

Specimen 5P: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: pretubular aggregate Strong 5P , 5P'
TS23: mesenchyme of metanephros Strong Regionally restricted 5P , 5P' Expression is in the condensing mesenchyme.
TS23: maturing glomerular tuft Strong Regionally restricted 5P , 5P' Expression is in the metanephric glomerulus in the uretric bud.


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last database update
05/21/2024
MGI 6.23
The Jackson Laboratory