Gene Expression Data
Assay Details
Assay
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Reference:
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J:168030
Granier C, et al., Nodal cis-regulatory elements reveal epiblast and primitive endoderm heterogeneity in the peri-implantation mouse embryo. Dev Biol. 2011 Jan 15;349(2):350-62
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Assay type:
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RNA in situ
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MGI Accession ID:
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MGI:6274294
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Gene symbol:
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Nodal
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Gene name:
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nodal growth differentiation factor
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Probe:
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Nodal probe31
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Probe preparation:
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Antisense labelled with digoxigenin RNA
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Visualized with:
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Alkaline phosphatase
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Results
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Specimen
not shown:
embryonic day 3.0
(more )
Note: Late morula.
Specimen
not shown:
(close )
Genetic Background:
|
Not Specified
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Age:
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embryonic day 3.0
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Age Note:
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Age assigned curator based on morphological criteria provided by authors..
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Sex:
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Not Specified
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Type:
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whole mount
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Fixation:
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4% Paraformaldehyde
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Note:
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Late morula.
|
Structure |
Level |
Pattern |
Image |
Note |
TS3: compacted morula |
Present |
|
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Authors report expression from late morula stage.
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Specimen
5J:
embryonic day 3.5
(more )
Note: Mid blastocyst.
Specimen
5J:
(close )
Genetic Background:
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Not Specified
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Age:
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embryonic day 3.5
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Age Note:
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Age assigned by authors based on morphological criteria.
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Sex:
|
Not Specified
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Type:
|
whole mount
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Fixation:
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4% Paraformaldehyde
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Note:
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Mid blastocyst.
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Structure |
Level |
Pattern |
Image |
Note |
TS4: inner cell mass |
Present |
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5J
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Expression in inner cell mass (ICM) cells of early to hatched blastocysts.
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Specimen
5K:
embryonic day 3.5
(more )
Note: Expanding blastocyst.
Specimen
5K:
(close )
Genetic Background:
|
Not Specified
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Age:
|
embryonic day 3.5
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Age Note:
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Age assigned by authors based on morphological criteria.
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Sex:
|
Not Specified
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Type:
|
whole mount
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Fixation:
|
4% Paraformaldehyde
|
Note:
|
Expanding blastocyst.
|
Structure |
Level |
Pattern |
Image |
Note |
TS4: inner cell mass |
Present |
|
5K
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Expression in inner cell mass (ICM) cells of early to hatched blastocysts.
|
Specimen
5L:
embryonic day 4.0
(more )
Note: Expanding blastocyst.
Specimen
5L:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 4.0
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Age Note:
|
Age assigned by authors based on morphological criteria.
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Sex:
|
Not Specified
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Type:
|
whole mount
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Fixation:
|
4% Paraformaldehyde
|
Note:
|
Expanding blastocyst.
|
Structure |
Level |
Pattern |
Image |
Note |
TS5: inner cell mass |
Present |
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5L
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Expression in inner cell mass (ICM) cells of early to hatched blastocysts.
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Specimen
5M:
embryonic day 4.5
(more )
Note: Implanted blastocyst.
Specimen
5M:
(close )
Genetic Background:
|
Not Specified
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Age:
|
embryonic day 4.5
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Age Note:
|
Age assigned by authors based on morphological criteria.
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Sex:
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Not Specified
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Type:
|
whole mount
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Fixation:
|
4% Paraformaldehyde
|
Note:
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Implanted blastocyst.
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Structure |
Level |
Pattern |
Image |
Note |
TS6: epiblast |
Present |
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5M
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Authors report majority of embryos with expression in both ICM derivatives.
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TS6: primitive endoderm |
Strong |
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5M
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Authors report majority of embryos with expression in both ICM derivatives. In 61/86 embryos, primitive endoderm (PrE) expression was stronger in some cells than in others.
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Specimen
5N:
embryonic day 4.5
(more )
Note: Implanted blastocyst.
Specimen
5N:
(close )
Genetic Background:
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Not Specified
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Age:
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embryonic day 4.5
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Age Note:
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Age assigned by authors based on morphological criteria.
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Sex:
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Not Specified
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Type:
|
whole mount
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Fixation:
|
4% Paraformaldehyde
|
Note:
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Implanted blastocyst.
|
Structure |
Level |
Pattern |
Image |
Note |
TS6: epiblast |
Present |
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5N
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In 25/86 embryos, expression exclusively in epiblast.
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Specimen
5O:
embryonic day 5.0
(more )
Specimen
5O:
(close )
Genetic Background:
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Not Specified
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Age:
|
embryonic day 5.0
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Age Note:
|
Age assigned by authors based on morphological criteria.
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Sex:
|
Not Specified
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Type:
|
whole mount
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Fixation:
|
4% Paraformaldehyde
|
Specimen
5P:
embryonic day 5.25
(more )
Specimen
5P:
(close )
Genetic Background:
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Not Specified
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Age:
|
embryonic day 5.25
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Sex:
|
Not Specified
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Type:
|
whole mount
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Fixation:
|
4% Paraformaldehyde
|
|