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Gene Expression Data
Assay Details
Assay
Reference: J:198109 Oeschger FM, et al., Gene expression analysis of the embryonic subplate. Cereb Cortex. 2012 Jun;22(6):1343-59
Assay type: RNA in situ
MGI Accession ID: MGI:6258671
Gene symbol: Slc8a1
Gene name: solute carrier family 8 (sodium/calcium exchanger), member 1
Probe: Slc8a1 cDNA3
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 2g: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cortical subplate Strong 2g
TS23: cortical plate Weak Diffuse 2g

Specimen 3i wild-type: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cortical subplate Present 3i Wild-type

Specimen 3i Reeler: embryonic day 15.5; Relnrl-Orl/Relnrl-Orl (more )
Structure Level Pattern Image Note
TS23: cerebral cortex Absent 3i Reeler

Specimen S3b E13.5: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: cerebral cortex Present Regionally restricted S3b E13.5 Expression was detected in lateral cortex.

Specimen S3b E14.5: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: cortical subplate Strong S3b E14.5
TS22: cerebral cortex Weak S3b E14.5 Additional weaker expression was found in other cortical layers.

Specimen S3b E15.5: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cortical subplate Strong S3b E15.5
TS23: cerebral cortex Weak S3b E15.5 Additional weaker expression was found in other cortical layers.

Specimen S3b E17.5: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: cortical subplate Strong S3b E17.5
TS25: cerebral cortex Weak S3b E17.5 Additional weaker expression was found in other cortical layers.

Specimen S3b P8: postnatal day 8 (more )
Structure Level Pattern Image Note
TS28: cortical subplate Strong S3b P8
TS28: cerebral cortex Weak S3b P8 Additional weaker expression was found in other cortical layers.
TS28: cortical layer V Weak S3b P8
TS28: cortical layer VI Weak S3b P8

Specimen S3b Adult: postnatal adult (more )
Structure Level Pattern Image Note
TS28: cortical subplate Strong S3b Adult
TS28: cerebral cortex Weak S3b Adult Additional weaker expression was found in other cortical layers.
TS28: cortical layer V Weak S3b Adult
TS28: cortical layer VI Weak S3b Adult

Specimen S4e: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cortical subplate Present S4e
TS23: lateral ganglionic eminence Present S4e
TS23: telencephalon septum Present S4e

Specimen S4e': postnatal day 8 (more )
Structure Level Pattern Image Note
TS28: hippocampus Present S4e'
TS28: prethalamus Present S4e'
TS28: thalamus Present S4e'

Specimen not shown: embryonic day 13.5 (more )
Note: Table S5
Structure Level Pattern Image Note
TS22: piriform cortex Present

Specimen not shown: embryonic day 14.5 (more )
Note: Table S5
Structure Level Pattern Image Note
TS22: hippocampus Present
TS22: piriform cortex Present
TS22: telencephalon septum Present

Specimen not shown: embryonic day 15.5 (more )
Note: Table S5
Structure Level Pattern Image Note
TS23: globus pallidus Present
TS23: hippocampus Present
TS23: telencephalon septum Present
TS23: thalamus Present

Specimen not shown: embryonic day 17.5 (more )
Note: Table S5
Structure Level Pattern Image Note
TS25: globus pallidus Present
TS25: hippocampus Present
TS25: telencephalon septum Present
TS25: thalamus Present

Specimen not shown: postnatal day 8 (more )
Note: Table S5
Structure Level Pattern Image Note
TS28: diencephalon Present Widespread Expression was very widespread.
TS28: telencephalon Present Widespread Expression was very widespread.
TS28: hypothalamus Strong
TS28: septal nucleus Strong
TS28: thalamic nucleus Strong
TS28: corpus striatum Absent

Specimen not shown: postnatal adult (more )
Note: Table S5
Structure Level Pattern Image Note
TS28: diencephalon Present Widespread Expression was very widespread.
TS28: telencephalon Present Widespread Expression was very widespread.
TS28: claustrum Present
TS28: endopiriform nucleus Present
TS28: thalamic nucleus Strong Strong in some thalamic nuclei.
TS28: corpus striatum Absent


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
05/07/2024
MGI 6.23
The Jackson Laboratory