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Gene Expression Data
Assay Details
Assay
Reference: J:151979 Katori S, et al., Protocadherin-alpha family is required for serotonergic projections to appropriately innervate target brain areas. J Neurosci. 2009 Jul 22;29(29):9137-47
Assay type: Immunohistochemistry
MGI Accession ID: MGI:5789389
Gene symbol: Slc6a4
Gene name: solute carrier family 6 (neurotransmitter transporter, serotonin), member 4
Antibody: anti-Sert
Detection system: Biotinylated secondary antibody/[Strept]avidin coupled to horseradish peroxidase
Results
Specimen 3A: postnatal (more )
Structure Level Pattern Image Note
TS28: main olfactory bulb external plexiform layer Strong 3A
TS28: main olfactory bulb glomerular layer Strong 3A
TS28: main olfactory bulb granule cell layer Strong 3A
TS28: main olfactory bulb internal plexiform layer Strong 3A
TS28: main olfactory bulb mitral cell layer Strong 3A

Specimen 3B: postnatal; Pcdhatm3Tyag/Pcdhatm3Tyag (more )
Structure Level Pattern Image Note
TS28: main olfactory bulb external plexiform layer Present 3B Fewer serotonergic fibers, compared with the wild-type.
TS28: main olfactory bulb glomerular layer Present 3B Fewer serotonergic fibers, compared with the wild-type.
TS28: main olfactory bulb internal plexiform layer Present 3B Fewer serotonergic fibers, compared with the wild-type.
TS28: main olfactory bulb mitral cell layer Present 3B Fewer serotonergic fibers, compared with the wild-type.
TS28: main olfactory bulb granule cell layer Strong 3B More serotonergic fibers, compared with the wild-type.

Specimen 3C: postnatal (more )
Structure Level Pattern Image Note
TS28: cingulate cortex Present 3C

Specimen 3D: postnatal; Pcdhatm3Tyag/Pcdhatm3Tyag (more )
Structure Level Pattern Image Note
TS28: cingulate cortex Present 3D Lower expression throughout, compared with wild-type mice.

Specimen 3E: postnatal (more )
Structure Level Pattern Image Note
TS28: cortical layer I Strong 3E With a slightly higher density in layers I and IV.
TS28: cortical layer II Strong 3E With a slightly higher density in layers I and IV.
TS28: cortical layer III Strong 3E With a slightly higher density in layers I and IV.
TS28: cortical layer IV Strong 3E With a slightly higher density in layers I and IV.
TS28: cortical layer V Strong 3E With a slightly higher density in layers I and IV.
TS28: cortical layer VI Strong 3E With a slightly higher density in layers I and IV.

Specimen 3F: postnatal; Pcdhatm3Tyag/Pcdhatm3Tyag (more )
Structure Level Pattern Image Note
TS28: cortical layer I Strong 3F More serotonergic fibers, compared with the wild-type.
TS28: cortical layer II Present Regionally restricted 3F Short, clumped fibers were frequently observed in layer II/III of only the most rostral part of the primary motor cortex.
TS28: cortical layer III Present Regionally restricted 3F Short, clumped fibers were frequently observed in layer II/III of only the most rostral part of the primary motor cortex.

Specimen 3G: postnatal (more )
Structure Level Pattern Image Note
TS28: entorhinal cortex Present 3G
TS28: dorsal lateral geniculate nucleus Present Uniform 3G

Specimen 3H: postnatal; Pcdhatm3Tyag/Pcdhatm3Tyag (more )
Structure Level Pattern Image Note
TS28: entorhinal cortex Present 3H Dramatically greater expression than in wild-type mice.
TS28: dorsal lateral geniculate nucleus Present Regionally restricted 3H Serotonergic fibers were accumulated around these nuclei and sparse in the central regions.

Specimen 4A: postnatal day 21 (more )
Structure Level Pattern Image Note
TS28: caudate-putamen Moderate 4A
TS28: globus pallidus Strong Uniform 4A Fairly evenly distributed.

Specimen 4B: postnatal day 21; Pcdhatm3Tyag/Pcdhatm3Tyag (more )
Structure Level Pattern Image Note
TS28: caudate-putamen Weak 4B Dramatically decreased expression, compared with the wild-type.
TS28: globus pallidus Strong 4B Increased expression, prominent only in the peripheral region, compared with the wild-type. The central regions were more sparsely innervated.

Specimen 4C: postnatal day 21 (more )
Structure Level Pattern Image Note
TS28: substantia nigra Present Widespread 4C

Specimen 4D: postnatal day 21; Pcdhatm3Tyag/Pcdhatm3Tyag (more )
Structure Level Pattern Image Note
TS28: substantia nigra Present Regionally restricted 4D Obviously increased expression in the peripheral region, compared with the wild-type. The central regions were more sparsely innervated.

Specimen 4E: postnatal day 21 (more )
Structure Level Pattern Image Note
TS28: dorsal lateral geniculate nucleus Present Uniform 4E
TS28: medial geniculate nucleus Present Uniform 4E

Specimen 4F: postnatal day 21; Pcdhatm3Tyag/Pcdhatm3Tyag (more )
Structure Level Pattern Image Note
TS28: dorsal lateral geniculate nucleus Present 4F Serotonergic fibers were accumulated around these nuclei and sparse in the central regions.
TS28: medial geniculate nucleus Present 4F Serotonergic fibers were accumulated around these nuclei and sparse in the central regions.

Specimen 5A/C: postnatal day 21 (more )
Structure Level Pattern Image Note
TS28: hippocampus molecular layer Present 5C , 5A Relatively higher expression.
TS28: hippocampus stratum lacunosum Present 5C , 5A Relatively higher expression.
TS28: hippocampus stratum radiatum Present 5C , 5A Relatively higher expression.
TS28: dentate gyrus Present 5A , 5C Relatively lower expression.
TS28: hippocampus stratum oriens Present 5A , 5C Relatively lower expression.

Specimen 5B/D: postnatal day 21; Pcdhatm3Tyag/Pcdhatm3Tyag (more )
Structure Level Pattern Image Note
TS28: hippocampus molecular layer Present 5B , 5D Dramatically increased expression, compared with wild-type. A quantitative analysis was shown in 5F.
TS28: hippocampus stratum lacunosum Present 5B , 5D Dramatically increased expression, compared with wild-type. A quantitative analysis was shown in 5F.
TS28: dentate gyrus Present 5B , 5D Decreased expression, compared with wild-type. A quantitative analysis was shown in 5F.
TS28: hippocampus stratum oriens Present 5B , 5D Decreased expression, compared with wild-type. A quantitative analysis was shown in 5F.
TS28: hippocampus Present 5B , 5D There was no significant difference in the average density of the serotonergic fibers as a whole, compared with the wild-type as shown in 5F.

Specimen 6A: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: caudate-putamen Present Scattered 6A Sparse expression.
TS28: globus pallidus Present Scattered 6A Sparse expression.
TS28: telencephalon Present Regionally restricted 6A Some concentration was seen at the border between the caudate-putamen and globus pallidus.

Specimen 6B: postnatal day 7; Pcdhatm3Tyag/Pcdhatm3Tyag (more )
Structure Level Pattern Image Note
TS28: caudate-putamen Present Scattered 6B Sparse expression, similar as the wild-type.
TS28: globus pallidus Present Scattered 6B Sparse expression, similar as the wild-type.

Specimen 6C: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: dorsal lateral geniculate nucleus Present Regionally restricted 6C Expression was sparse in the central regions and concentrated in the peripheral regions.
TS28: medial geniculate nucleus Present Regionally restricted 6C Expression was sparse in the central regions and concentrated in the peripheral regions.
TS28: substantia nigra Present Regionally restricted 6C Expression was sparse in the central regions and concentrated in the peripheral regions.

Specimen 6D: postnatal day 7; Pcdhatm3Tyag/Pcdhatm3Tyag (more )
Structure Level Pattern Image Note
TS28: dorsal lateral geniculate nucleus Present Regionally restricted 6D Expression was sparse in the central regions and concentrated in the peripheral regions.
TS28: medial geniculate nucleus Present Regionally restricted 6D Expression was sparse in the central regions and concentrated in the peripheral regions.
TS28: substantia nigra Present Regionally restricted 6D Expression was sparse in the central regions and concentrated in the peripheral regions.

Specimen 6E: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: dorsal lateral geniculate nucleus Present Regionally restricted 6E Expression was sparse in the central regions and concentrated in the peripheral regions.
TS28: medial geniculate nucleus Present Regionally restricted 6E Expression was sparse in the central regions and concentrated in the peripheral regions.
TS28: substantia nigra Present Regionally restricted 6E Expression was sparse in the central regions and concentrated in the peripheral regions.

Specimen 6F: postnatal day 7; Pcdhatm3Tyag/Pcdhatm3Tyag (more )
Structure Level Pattern Image Note
TS28: dorsal lateral geniculate nucleus Present Regionally restricted 6F Expression was sparse in the central regions and concentrated in the peripheral regions.
TS28: medial geniculate nucleus Present Regionally restricted 6F Expression was sparse in the central regions and concentrated in the peripheral regions.
TS28: substantia nigra Present Regionally restricted 6F Expression was sparse in the central regions and concentrated in the peripheral regions.

Specimen 6G: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: hippocampus molecular layer Present 6G Dense expression.
TS27: hippocampus stratum lacunosum Present 6G Dense expression.
TS27: hippocampus stratum radiatum Present 6G Dense expression.
TS27: hippocampus stratum oriens Present Scattered 6G Sparse expression.
TS27: dentate gyrus Present Single cells 6G Only a few were detected.

Specimen 6H: postnatal day 0; Pcdhatm3Tyag/Pcdhatm3Tyag (more )
Structure Level Pattern Image Note
TS27: hippocampus molecular layer Present 6H Dense expression. Slightly higher than in wild-type.
TS27: hippocampus stratum lacunosum Present 6H Dense expression. Slightly higher than in wild-type.
TS27: hippocampus stratum radiatum Present 6H Dense expression. Slightly higher than in wild-type.
TS27: dentate gyrus Present Scattered 6H Sparse expression.
TS27: hippocampus stratum oriens Present Scattered 6H Sparse expression.

Specimen 7A: postnatal day 21 (more )
Structure Level Pattern Image Note
TS28: dentate gyrus Present 7A
TS28: hippocampus molecular layer Present 7A
TS28: hippocampus stratum lacunosum Present 7A

Specimen 7B: postnatal day 21; Pcdhatm5.1Tyag/Pcdhatm5.1Tyag (more )
Structure Level Pattern Image Note
TS28: hippocampus molecular layer Present 7B Higher expression (170%, summarized in 7D) compared with wild-type.
TS28: hippocampus stratum lacunosum Present 7B Higher expression (170%, summarized in 7D) compared with wild-type.
TS28: dentate gyrus Present 7B Lower expression (41%, summarized in 7D) compared with wild-type.

Specimen 7C: postnatal day 21; Pcdhatm4.1Tyag/Pcdhatm4.1Tyag (more )
Structure Level Pattern Image Note
TS28: dentate gyrus Present 7C Expression was similar to the wild-type.
TS28: hippocampus molecular layer Present 7C Expression was similar to the wild-type.
TS28: hippocampus stratum lacunosum Present 7C Expression was similar to the wild-type.

Specimen S6A: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: barrel cortex Present S6A

Specimen S6B: postnatal day 7; Pcdhatm3Tyag/Pcdhatm3Tyag (more )
Structure Level Pattern Image Note
TS28: barrel cortex Present S6B Similar to the wild-type.

Specimen not shown: postnatal day 21; Pcdhatm3Tyag/Pcdha+ (more )
Structure Level Pattern Image Note
TS28: hippocampus Present There was no apparent difference in serotonergic fiber density, compared with wild-type, as shown in 5F.

Specimen not shown: postnatal day 21; Pcdhatm5.1Tyag/Pcdha+ (more )
Structure Level Pattern Image Note
TS28: dentate gyrus Present Expression was similar to the wild-type.
TS28: hippocampus molecular layer Present Expression was similar to the wild-type.
TS28: hippocampus stratum lacunosum Present Expression was similar to the wild-type.


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last database update
05/21/2024
MGI 6.23
The Jackson Laboratory