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Gene Expression Data
Assay Details
Assay
Reference: J:41321 Schiffmann SN, et al., Reelin mRNA expression during mouse brain development. Eur J Neurosci. 1997 May;9(5):1055-71
Assay type: RNA in situ
MGI Accession ID: MGI:5698272
Gene symbol: Reln
Gene name: reelin
Probe: Reelin probe6
Probe preparation: Antisense labelled with S35 RNA
Visualized with: Autoradiography
Assay notes: The authors mentioned that both autoradiographic and digoxigenin-labelled riboprobe (MGI:5698526) techniques were used, and gave consistent results. Digoxigenin-labelled riboprobe method was somewhat less sensitive; therefore illustrations are based on the autoradiographic procedure.
Results
Specimen 1A/A': embryonic day 13.5-14.5 (more )
Structure Level Pattern Image Note
TS22: main olfactory bulb Very strong Regionally restricted 1A/A' , 1A inset Expressed in the layer of developing mitral cells.

Specimen 1B/B': embryonic day 13.5-14.5 (more )
Structure Level Pattern Image Note
TS22: pigmented retinal epithelium Strong 1B/B'
TS22: neural retinal epithelium Strong Regionally restricted 1B/B' Expressed in postmigratory neurons, probably ganglion cells.

Specimen 1C/C': embryonic day 13.5-14.5 (more )
Structure Level Pattern Image Note
TS22: hippocampus Strong Regionally restricted 1C/C' Expressed in the hippocampal anlage, with heavy expression in the marginal zone and some weak expression in the intermediate zone.

Specimen 1D: embryonic day 13.5-14.5 (more )
Structure Level Pattern Image Note
TS22: hippocampus Strong 1D Expressed in Cajal-Retzius cells.

Specimen 1E: embryonic day 13.5-14.5 (more )
Structure Level Pattern Image Note
TS22: neocortex Present 1E Expressed in Cajal-Retzius cells.

Specimen 2A/A': embryonic day 13.5-14.5 (more )
Structure Level Pattern Image Note
TS22: basal forebrain Present 2A/A' Weaker expression in the external part, corresponding to the future pyriform cortex. Weak expression in striatum. Strong expression in the bed nucleus of the stria terminalis.
TS22: preoptic area Strong 2A/A'
TS22: hypothalamus Strong Regionally restricted 2A/A' Expressed in part of the hypothalamus.
TS22: forebrain ventricular layer Absent 2A/A'

Specimen 2B/B': embryonic day 13.5-14.5 (more )
Structure Level Pattern Image Note
TS22: telencephalon septum Moderate Regionally restricted 2B/B' Expressed in septal nuclei.
TS22: preoptic area Strong 2B/B'

Specimen 3A/A': embryonic day 13.5-14.5 (more )
Structure Level Pattern Image Note
TS22: cerebellum Present Regionally restricted 3A/A' Expressed in the external granular layer, and in some unidentified cells below the early Purkinje cell plate, possibly developing central nuclei. No expression in Purkinje cells.
TS22: hindbrain Weak Regionally restricted 3A/A' Expressed in neuroepithelial cells in the germinal zone adjacent to the fourth ventricle. Some labelled cells were observed in tegmental fields, most probably associated with reticular nuclei.

Specimen 3B/B': embryonic day 13.5-14.5 (more )
Structure Level Pattern Image Note
TS22: tectum Present Regionally restricted 3B/B' Expressed in the outer tier, particularly in the paramedian field (marginal zone). Tectal labelling was stronger at rostral levels. No expression in the ventricular zone.

Specimen 3C/C': embryonic day 13.5-14.5 (more )
Structure Level Pattern Image Note
TS22: spinal cord Strong Regionally restricted 3C/C' Expressed in ventral horns. Weaker expression in the ventral horns.

Specimen not shown: embryonic day 13.5-14.5 (more )
Structure Level Pattern Image Note
TS22: cortical plate Absent Either at the future neocortical or the hippocampal levels.
TS22: thalamus Present Regionally restricted Lower level expression in the thalamic fields.

Specimen 4A: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: cerebral cortex Strong Regionally restricted 4A Expressed in Cajal-Retzius cells at the periphery.
TS25: neocortex Strong Regionally restricted 4A Expressed in the cingulate cortex.
TS25: hippocampus Weak Regionally restricted 4A Expressed in the developing straitum.
TS25: telencephalon septum Weak Regionally restricted 4A Expressed in the lateral and medial septal nuclei.

Specimen 4B/B': embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: neural retina Strong Regionally restricted 4B/B' Expressed in the ganglion cell layer.
TS25: pigmented retinal epithelium Absent 4B/B'

Specimen 4C/C': embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: hippocampus Strong Regionally restricted 4C/C' Expressed in Cajal-Retzius neurons both in the developing Ammons horns and the incipient dentate gyrus.

Specimen 4D/D': embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: lateral geniculate nucleus Moderate 4D/D'
TS25: zona incerta Moderate 4D/D'

Specimen 5A/A': embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: lateral habenular nucleus Present 5A/A' More in the medial than in the lateral nucleus.
TS25: medial habenular nucleus Present 5A/A' More in the medial than in the lateral nucleus.
TS25: cerebral cortex Strong Regionally restricted 5A/A' Expressed in Cajal-Retzius cells at the periphery.
TS25: hippocampus Strong Regionally restricted 5A/A' Expressed in Cajal-Retzius neurons in the developing Ammons horns.

Specimen 5B/B': embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: cerebellum granule cell layer Present Regionally restricted 5B/B' Expressed in the external granular cells and migrating granular neurons.
TS25: cerebellum external granule cell layer Strong 5B/B'
TS25: cerebellum layer Present Regionally restricted 5B/B' Expressed in the external granular layer. No expression in Purkinje cells. Weak expression in the cerebellar nuclei.

Specimen 5C: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: cerebellum granule cell layer Present Regionally restricted 5C Expressed in the external granular cells and migrating granular neurons.
TS25: cerebellum external granule cell layer Present 5C

Specimen 5D/D': embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: inferior colliculus Weak Regionally restricted 5D/D' Expressed in the marginal layer. Expression was maximal in the paramedian region. No expression in the ventricular zones.

Specimen not shown: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: cerebral cortex intermediate zone Absent
TS25: cerebral cortex ventricular zone Absent
TS25: cortical plate Absent
TS25: main olfactory bulb Very strong Expressed in mitral cells and tufted cells.
TS25: hypothalamus Moderate
TS25: midbrain tegmentum Present Expressed in the future reticulotegmental nucleus.
TS25: pons Weak Regionally restricted Expressed in the ventral field. No expression in the inferior olivary complex and facial nerve nuclei.
TS25: brainstem Weak Regionally restricted Expressed in the medullary reticular formation.
TS25: ventral grey horn Strong Anterior horn neurons.

Specimen 6A/A': postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: main olfactory bulb mitral cell layer Strong 6A/A'
TS27: main olfactory bulb granule cell layer Absent 6A/A' Barely detectable.
TS27: neocortex Strong Regionally restricted 6A/A' Expressed in Cajal-Retzius cells of the marginal zone.

Specimen 6B: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: neocortex Strong Regionally restricted 6B Expressed in Cajal-Retzius cells of the marginal zone.

Specimen 6C: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: main olfactory bulb mitral cell layer Strong 6C
TS27: main olfactory bulb granule cell layer Absent 6C

Specimen 6D/D': postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: retina ganglion cell layer Strong 6D/D'

Specimen 7A/A': postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: dentate gyrus Strong Regionally restricted 7A/A' Expressed in Cajal-Retzius neurons in the marginal zone.
TS27: hippocampus Strong Regionally restricted 7A/A' Expressed in Cajal-Retzius neurons in the marginal zone.

Specimen 7B/B': postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: paraventricular hypothalamic nucleus Weak 7B/B'

Specimen not shown: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: accumbens nucleus Moderate Moderate to low expression.
TS27: piriform cortex Moderate
TS27: olfactory tubercle Moderate Regionally restricted Expressed in Calleja islands.
TS27: habenula Present
TS27: lateral geniculate nucleus Present
TS27: zona incerta Present
TS27: tectum Present Regionally restricted Expressed in the superficial tiers, more concentrated in the midline than in the lateral field and appeared weaker than at the previous embryonic stage.
TS27: cochlear nucleus Present
TS27: midbrain tegmentum Present
TS27: posterior commissure Present
TS27: cerebellum external granule cell layer Present Regionally restricted Expressed in the inner tiers.
TS27: hindbrain Moderate Scattered Associated with parts of the reticular formation.
TS27: brainstem reticular formation Present Regionally restricted Expressed dorsally to the inferior olive.

Specimen 8A/A': postnatal day 5-6 (more )
Structure Level Pattern Image Note
TS28: neocortex Strong Regionally restricted 8A inset , 8A/A' Expressed in Cajal-Retzius cells in the marginal zone. Also expressed in scattered neurons in the cortical plate, more in its inner tiers than in the outer tiers.
TS28: neocortex layer Strong Scattered 8A inset , 8A/A' Positive cortical cells were not very abundant and distributed throughout all cortical layers, although more concentrated in the inner part of the cortex, at the level of future laminae V and VI.
TS28: cortical layer V Strong Scattered 8A inset , 8A/A'
TS28: cortical layer VI Strong Scattered 8A inset , 8A/A'

Specimen 8B/B': postnatal day 5-6 (more )
Structure Level Pattern Image Note
TS28: corpus striatum Weak 8B/B'

Specimen 9A/A': postnatal day 5-6 (more )
Structure Level Pattern Image Note
TS28: cerebellum external granule cell layer Present 9A/A'
TS28: cerebellum internal granule cell layer Present 9A/A'
TS28: cerebellum Purkinje cell layer Absent 9A/A'
TS28: deep cerebellar nucleus Trace 9A/A' Very low expression in the neurons.

Specimen 9B/B'/C: postnatal day 5-6 (more )
Structure Level Pattern Image Note
TS28: brainstem reticular formation Moderate Regionally restricted 9B/B' , 9C Expressed in a stream of neurons, presumably a component of the reticular formation.
TS28: inferior olivary nucleus Absent 9B/B'

Specimen 9D: postnatal day 5-6 (more )
Structure Level Pattern Image Note
TS28: cerebellum external granule cell layer Present 9D
TS28: cerebellum internal granule cell layer Present 9D

Specimen not shown: postnatal day 5-6 (more )
Structure Level Pattern Image Note
TS28: hippocampus layer Present Regionally restricted Expressed in Cajal-Retzius cells and the infrapyramidal layer.
TS28: dentate gyrus layer Present Regionally restricted Expressed in Cajal-Retzius cells and the hilar region.
TS28: main olfactory bulb mitral cell layer Very strong
TS28: main olfactory bulb glomerular layer Very strong Very strong expression in tufted cells. Moderate expression in the layer, probably in periglomerular neurons.
TS28: brain subventricular zone Weak Associated with oblique or tangentially orientated cells.
TS28: bed nucleus of stria terminalis Weak
TS28: reticular tegmental nucleus Weak
TS28: septal nucleus Weak
TS28: basal ventral medial thalamic nucleus Present
TS28: habenula Present
TS28: preoptic area Present
TS28: superior colliculus Present
TS28: trigeminal V motor nucleus Present
TS28: zona incerta Present
TS28: thalamic nucleus Weak Weak expression, with the exception of the lateral geniculate nucleus that was moderately positive.
TS28: lateral geniculate nucleus Moderate

Specimen 10A/A': postnatal adult (more )
Note: Samples are postnatal day 20 and older.
Structure Level Pattern Image Note
TS28: neocortex layer Present Scattered 10A/A' Expressed throughout all layers, without any systematic organization.
TS28: cortical layer I Present Scattered 10A/A' Fewer labelled Cajal-Retzius cells than during development.

Specimen 10B: postnatal adult (more )
Note: Samples are postnatal day 20 and older.
Structure Level Pattern Image Note
TS28: cortical layer I Present Scattered 10B

Specimen 10C: postnatal adult (more )
Note: Samples are postnatal day 20 and older.
Structure Level Pattern Image Note
TS28: cortical layer III Present Scattered 10C

Specimen 11A/A': postnatal adult (more )
Note: Samples are postnatal day 20 and older.
Structure Level Pattern Image Note
TS28: main olfactory bulb mitral cell layer Very strong 11A/A'
TS28: main olfactory bulb glomerular layer Present Regionally restricted 11A/A' Expressed in the most internal tiers. Weaker expression in the periglomemlar cells.
TS28: main olfactory bulb external plexiform layer Absent 11A/A'
TS28: main olfactory bulb granule cell layer Absent 11A/A'
TS28: main olfactory bulb internal plexiform layer Absent 11A/A'

Specimen 11B/B': postnatal adult (more )
Note: Samples are postnatal day 20 and older.
Structure Level Pattern Image Note
TS28: amygdala Present Diffuse 11B/B' There is some weak labelling as well as some scattered neurons with a more intense signal, particularly in the cortical contingent.

Specimen not shown: postnatal adult (more )
Note: Samples are postnatal day 20 and older.
Structure Level Pattern Image Note
TS28: brain subventricular zone Moderate Associated with tangentially orientated cells.
TS28: entorhinal cortex Strong Diffuse
TS28: basal ventral medial thalamic nucleus Absent
TS28: cerebellum Purkinje cell layer Absent
TS28: cerebellum external granule cell layer Absent
TS28: telencephalon septum Absent
TS28: brainstem reticular formation Present
TS28: preoptic area Present
TS28: superior colliculus Present
TS28: zona incerta Present
TS28: cerebellum internal granule cell layer Weak


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last database update
04/23/2024
MGI 6.23
The Jackson Laboratory