Gene Expression Data
Assay Details
Assay
|
Reference:
|
J:41321
Schiffmann SN, et al., Reelin mRNA expression during mouse brain development. Eur J Neurosci. 1997 May;9(5):1055-71
|
Assay type:
|
RNA in situ
|
MGI Accession ID:
|
MGI:5698272
|
Gene symbol:
|
Reln
|
Gene name:
|
reelin
|
Probe:
|
Reelin probe6
|
Probe preparation:
|
Antisense labelled with S35 RNA
|
Visualized with:
|
Autoradiography
|
Assay notes:
|
The authors mentioned that both autoradiographic and digoxigenin-labelled riboprobe (MGI:5698526) techniques were used, and gave consistent results. Digoxigenin-labelled riboprobe method was somewhat less sensitive; therefore illustrations are based on the autoradiographic procedure.
|
|
Results
|
Specimen
1A/A':
embryonic day 13.5-14.5
(more )
Specimen
1A/A':
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 13.5-14.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS22: main olfactory bulb |
Very strong |
Regionally restricted |
1A/A'
,
1A inset
|
Expressed in the layer of developing mitral cells.
|
Specimen
1B/B':
embryonic day 13.5-14.5
(more )
Specimen
1B/B':
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 13.5-14.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Specimen
1C/C':
embryonic day 13.5-14.5
(more )
Specimen
1C/C':
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 13.5-14.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS22: hippocampus |
Strong |
Regionally restricted |
1C/C'
|
Expressed in the hippocampal anlage, with heavy expression in the marginal zone and some weak expression in the intermediate zone.
|
Specimen
1D:
embryonic day 13.5-14.5
(more )
Specimen
1D:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 13.5-14.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS22: hippocampus |
Strong |
|
1D
|
Expressed in Cajal-Retzius cells.
|
Specimen
1E:
embryonic day 13.5-14.5
(more )
Specimen
1E:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 13.5-14.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS22: neocortex |
Present |
|
1E
|
Expressed in Cajal-Retzius cells.
|
Specimen
2A/A':
embryonic day 13.5-14.5
(more )
Specimen
2A/A':
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 13.5-14.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Specimen
2B/B':
embryonic day 13.5-14.5
(more )
Specimen
2B/B':
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 13.5-14.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Specimen
3A/A':
embryonic day 13.5-14.5
(more )
Specimen
3A/A':
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 13.5-14.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS22: cerebellum |
Present |
Regionally restricted |
3A/A'
|
Expressed in the external granular layer, and in some unidentified cells below the early Purkinje cell plate, possibly developing central nuclei. No expression in Purkinje cells.
|
TS22: hindbrain |
Weak |
Regionally restricted |
3A/A'
|
Expressed in neuroepithelial cells in the germinal zone adjacent to the fourth ventricle. Some labelled cells were observed in tegmental fields, most probably associated with reticular nuclei.
|
Specimen
3B/B':
embryonic day 13.5-14.5
(more )
Specimen
3B/B':
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 13.5-14.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS22: tectum |
Present |
Regionally restricted |
3B/B'
|
Expressed in the outer tier, particularly in the paramedian field (marginal zone). Tectal labelling was stronger at rostral levels. No expression in the ventricular zone.
|
Specimen
3C/C':
embryonic day 13.5-14.5
(more )
Specimen
3C/C':
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 13.5-14.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS22: spinal cord |
Strong |
Regionally restricted |
3C/C'
|
Expressed in ventral horns. Weaker expression in the ventral horns.
|
Specimen
not shown:
embryonic day 13.5-14.5
(more )
Specimen
not shown:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 13.5-14.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS22: cortical plate |
Absent |
|
|
Either at the future neocortical or the hippocampal levels.
|
TS22: thalamus |
Present |
Regionally restricted |
|
Lower level expression in the thalamic fields.
|
Specimen
4A:
embryonic day 17.5
(more )
Specimen
4A:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 17.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS25: cerebral cortex |
Strong |
Regionally restricted |
4A
|
Expressed in Cajal-Retzius cells at the periphery.
|
TS25: neocortex |
Strong |
Regionally restricted |
4A
|
Expressed in the cingulate cortex.
|
TS25: hippocampus |
Weak |
Regionally restricted |
4A
|
Expressed in the developing straitum.
|
TS25: telencephalon septum |
Weak |
Regionally restricted |
4A
|
Expressed in the lateral and medial septal nuclei.
|
Specimen
4B/B':
embryonic day 17.5
(more )
Specimen
4B/B':
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 17.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Specimen
4C/C':
embryonic day 17.5
(more )
Specimen
4C/C':
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 17.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS25: hippocampus |
Strong |
Regionally restricted |
4C/C'
|
Expressed in Cajal-Retzius neurons both in the developing Ammons horns and the incipient dentate gyrus.
|
Specimen
4D/D':
embryonic day 17.5
(more )
Specimen
4D/D':
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 17.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Specimen
5A/A':
embryonic day 17.5
(more )
Specimen
5A/A':
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 17.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Specimen
5B/B':
embryonic day 17.5
(more )
Specimen
5B/B':
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 17.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Specimen
5C:
embryonic day 17.5
(more )
Specimen
5C:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 17.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Specimen
5D/D':
embryonic day 17.5
(more )
Specimen
5D/D':
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 17.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS25: inferior colliculus |
Weak |
Regionally restricted |
5D/D'
|
Expressed in the marginal layer. Expression was maximal in the paramedian region. No expression in the ventricular zones.
|
Specimen
not shown:
embryonic day 17.5
(more )
Specimen
not shown:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 17.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Specimen
6A/A':
postnatal day 0
(more )
Specimen
6A/A':
(close )
Genetic Background:
|
Not Specified
|
Age:
|
postnatal day 0
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Specimen
6B:
postnatal day 0
(more )
Specimen
6B:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
postnatal day 0
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS27: neocortex |
Strong |
Regionally restricted |
6B
|
Expressed in Cajal-Retzius cells of the marginal zone.
|
Specimen
6C:
postnatal day 0
(more )
Specimen
6C:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
postnatal day 0
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Specimen
6D/D':
postnatal day 0
(more )
Specimen
6D/D':
(close )
Genetic Background:
|
Not Specified
|
Age:
|
postnatal day 0
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Specimen
7A/A':
postnatal day 0
(more )
Specimen
7A/A':
(close )
Genetic Background:
|
Not Specified
|
Age:
|
postnatal day 0
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS27: dentate gyrus |
Strong |
Regionally restricted |
7A/A'
|
Expressed in Cajal-Retzius neurons in the marginal zone.
|
TS27: hippocampus |
Strong |
Regionally restricted |
7A/A'
|
Expressed in Cajal-Retzius neurons in the marginal zone.
|
Specimen
7B/B':
postnatal day 0
(more )
Specimen
7B/B':
(close )
Genetic Background:
|
Not Specified
|
Age:
|
postnatal day 0
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Specimen
not shown:
postnatal day 0
(more )
Specimen
not shown:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
postnatal day 0
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Specimen
8A/A':
postnatal day 5-6
(more )
Specimen
8A/A':
(close )
Genetic Background:
|
Not Specified
|
Age:
|
postnatal day 5-6
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS28: neocortex |
Strong |
Regionally restricted |
8A inset
,
8A/A'
|
Expressed in Cajal-Retzius cells in the marginal zone. Also expressed in scattered neurons in the cortical plate, more in its inner tiers than in the outer tiers.
|
TS28: neocortex layer |
Strong |
Scattered |
8A inset
,
8A/A'
|
Positive cortical cells were not very abundant and distributed throughout all cortical layers, although more concentrated in the inner part of the cortex, at the level of future laminae V and VI.
|
TS28: cortical layer V |
Strong |
Scattered |
8A inset
,
8A/A'
|
|
TS28: cortical layer VI |
Strong |
Scattered |
8A inset
,
8A/A'
|
|
Specimen
8B/B':
postnatal day 5-6
(more )
Specimen
8B/B':
(close )
Genetic Background:
|
Not Specified
|
Age:
|
postnatal day 5-6
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Specimen
9A/A':
postnatal day 5-6
(more )
Specimen
9A/A':
(close )
Genetic Background:
|
Not Specified
|
Age:
|
postnatal day 5-6
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Specimen
9B/B'/C:
postnatal day 5-6
(more )
Specimen
9B/B'/C:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
postnatal day 5-6
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Specimen
9D:
postnatal day 5-6
(more )
Specimen
9D:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
postnatal day 5-6
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Specimen
not shown:
postnatal day 5-6
(more )
Specimen
not shown:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
postnatal day 5-6
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Specimen
10A/A':
postnatal adult
(more )
Note: Samples are postnatal day 20 and older.
Specimen
10A/A':
(close )
Genetic Background:
|
Not Specified
|
Age:
|
postnatal adult
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Note:
|
Samples are postnatal day 20 and older.
|
Structure |
Level |
Pattern |
Image |
Note |
TS28: neocortex layer |
Present |
Scattered |
10A/A'
|
Expressed throughout all layers, without any systematic organization.
|
TS28: cortical layer I |
Present |
Scattered |
10A/A'
|
Fewer labelled Cajal-Retzius cells than during development.
|
Specimen
10B:
postnatal adult
(more )
Note: Samples are postnatal day 20 and older.
Specimen
10B:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
postnatal adult
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Note:
|
Samples are postnatal day 20 and older.
|
Specimen
10C:
postnatal adult
(more )
Note: Samples are postnatal day 20 and older.
Specimen
10C:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
postnatal adult
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Note:
|
Samples are postnatal day 20 and older.
|
Specimen
11A/A':
postnatal adult
(more )
Note: Samples are postnatal day 20 and older.
Specimen
11A/A':
(close )
Genetic Background:
|
Not Specified
|
Age:
|
postnatal adult
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Note:
|
Samples are postnatal day 20 and older.
|
Specimen
11B/B':
postnatal adult
(more )
Note: Samples are postnatal day 20 and older.
Specimen
11B/B':
(close )
Genetic Background:
|
Not Specified
|
Age:
|
postnatal adult
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Note:
|
Samples are postnatal day 20 and older.
|
Structure |
Level |
Pattern |
Image |
Note |
TS28: amygdala |
Present |
Diffuse |
11B/B'
|
There is some weak labelling as well as some scattered neurons with a more intense signal, particularly in the cortical contingent.
|
Specimen
not shown:
postnatal adult
(more )
Note: Samples are postnatal day 20 and older.
Specimen
not shown:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
postnatal adult
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Note:
|
Samples are postnatal day 20 and older.
|
|