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Gene Expression Data
Assay Details
Assay
Reference: J:150704 Alishahi A, et al., Regional expression of MTG genes in the developing mouse central nervous system. Dev Dyn. 2009 Jul 17;238(8):2095-2102
Assay type: RNA in situ
MGI Accession ID: MGI:5575755
Gene symbol: Runx1t1
Gene name: RUNX1 translocation partner 1
Probe: MTG8 cDNA
Probe preparation: Antisense labelled with digoxigenin RNA
Results
Specimen 1C: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: telencephalon mantle layer Present Regionally restricted 1C Expressed in the ventral telencephalon: lateral and medial ganglionic eminences. Not expressed in the cortex.

Specimen 2I: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: telencephalon mantle layer Strong Regionally restricted 2I Not expressed in the dorsal telencephalon. Expressed in the caudal, lateral and medial ganglionic eminences.

Specimen 2J: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: telencephalon mantle layer Strong Regionally restricted 2J Not expressed in the dorsal telencephalon. Expressed in the caudal, lateral and medial ganglionic eminences.

Specimen 2K: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: telencephalon Present Regionally restricted 2K Not expressed in the dorsal telencephalon.
TS19: diencephalon Present Regionally restricted 2K Expressed in the mantle zone of the thalamus, and the dorso-caudal part of the hypothalamus.

Specimen 2L: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: midbrain Present Regionally restricted 2L Not expressed in the pretectum.

Specimen 3I: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: telencephalon mantle layer Present Regionally restricted 3I Expressed in the ventral telencephalic mantle zone.
TS21: cortical preplate Present 3I

Specimen 3J: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: cortical preplate Present 3J
TS21: telencephalon mantle layer Present Regionally restricted 3J Expressed in the ventral telencephalic mantle zone.
TS21: thalamus mantle layer Present Graded 3J Expression was was higher in the caudo-dorsal region than in the rostro-ventral region.

Specimen 4C: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex Present Regionally restricted 4C Expression was decreased in general, with the exception of the medial and lateral parts.
TS23: thalamus mantle layer Present 4C
TS23: hypothalamus Present Regionally restricted 4C Expressed in the paraventricular hypothalamus.
TS23: prethalamus Present Regionally restricted 4C Expressed in the reticular nucleus of the prethalamus and the subthalamic nucleus.

Specimen 4D: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: thalamus mantle layer Present 4D
TS23: prethalamus Present 4D Expressed in the subthalamic nucleus.

Specimen 6E: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: retina Present Regionally restricted 6E Expressed in the ganglion cell layer. No expression in the ventricular zone.

Specimen 6F: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: retina Present Regionally restricted 6F Expressed in the ganglion cell layer. No expression in the ventricular zone.

Specimen 7E: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: midbrain Present Regionally restricted 7E Expressed in the ventral midbrain.
TS20: hindbrain Present Regionally restricted 7E Expressed in part of the hindbrain.
TS20: cerebellum primordium Present 7E

Specimen 7F: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: midbrain Present Regionally restricted 7F Expressed in the ventral midbrain.
TS20: hindbrain Present Regionally restricted 7F Expressed in part of the hindbrain.
TS20: cerebellum primordium Present 7F
TS20: thalamus mantle layer Present Graded 7F Expression was was higher in the caudo-dorsal region than in the rostro-ventral region.

Specimen 8E: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: future spinal cord Strong Regionally restricted 8E Expressed in the mantle zone of the dorsal progenitor population. Strong expression in the motor neurons.

Specimen 8F: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: spinal cord lateral wall Present Diffuse 8F Expressed in most of the dorsal horn.

Specimen not shown: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: cerebral cortex Present Regionally restricted Expression was decreased in general, with the exception of the medial and lateral parts.
TS27: paraventricular hypothalamic nucleus Present
TS27: reticular thalamic nucleus Present
TS27: retina ganglion cell layer Present
TS27: thalamus Present
TS27: prethalamus Present Expressed in the subthalamic nucleus.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
05/07/2024
MGI 6.23
The Jackson Laboratory