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Gene Expression Data
Assay Details
Assay
Reference: J:139010 MacDonald JL, et al., Histone deacetylases 1 and 2 are expressed at distinct stages of neuro-glial development. Dev Dyn. 2008 Aug;237(8):2256-67
Assay type: Immunohistochemistry
MGI Accession ID: MGI:5565615
Gene symbol: Hdac2
Gene name: histone deacetylase 2
Antibody: anti-HDAC2
Detection system: Secondary antibody coupled to Alexa Fluor 594
Results
Specimen 2A/C: embryonic day 13.5 (more )
Note: Double labeled: red - Hdac2; green - Pcna (assay MGI:5566902).
Structure Level Pattern Image Note
TS21: brain Present Graded 2C , 2A Expressed throughout the brain. Robust expression in the outer layers of the developing neocortex, olfactory bulb and midbrain, with a lower expression in proliferating cells immediately adjacent to the lateral ventricle.
TS21: midbrain Present Graded 2C , 2A Most robustly detected in cells in the outer layers, with a lower expression in proliferating cells immediately adjacent to the lateral ventricle.
TS21: neocortex Present Graded 2C , 2A Most robustly detected in cells in the outer layers, with a lower expression in proliferating cells immediately adjacent to the lateral ventricle.
TS21: olfactory lobe Present Graded 2C , 2A Most robustly detected in cells in the outer layers, with a lower expression in proliferating cells immediately adjacent to the lateral ventricle.
TS21: telencephalon Present Graded 2C , 2A Most robustly detected in cells in the outer layers, with a lower expression in proliferating cells immediately adjacent to the lateral ventricle.
TS21: nasal capsule Absent 2A , 2C No expression in the cartilage around the olfactory epithelium.

Specimen 2D: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: neocortex Present Widespread 2D
TS21: cerebral cortex marginal layer Present 2D
TS21: cerebral cortex subventricular zone Present 2D
TS21: cerebral cortex ventricular layer Present 2D
TS21: cortical plate Present 2D

Specimen 2E: embryonic day 13.5 (more )
Note: Double labeled: red - Hdac2; green - Pcna (assay MGI:5566902).
Structure Level Pattern Image Note
TS21: cerebral cortex marginal layer Present 2E
TS21: cerebral cortex subventricular zone Present 2E
TS21: cerebral cortex ventricular layer Present 2E

Specimen 2F: embryonic day 13.5 (more )
Note: Double labeled: red - Hdac2; green - Dcx (assay MGI:5567092).
Structure Level Pattern Image Note
TS21: cerebral cortex marginal layer Present 2F
TS21: cerebral cortex subventricular zone Present 2F
TS21: cerebral cortex ventricular layer Present 2F
TS21: cortical plate Present 2F

Specimen 2G: embryonic day 13.5 (more )
Note: Double labeled: red - Hdac2; green - Pcna (assay MGI:5566902).
Structure Level Pattern Image Note
TS21: telencephalon Present Regionally restricted 2G Weakly expressed in PCNA-positive progenitors around the rostral tip of the lateral ventricle, but is highly expressed in the developing olfactory bulb.
TS21: olfactory lobe Strong 2G

Specimen 2H: embryonic day 13.5 (more )
Note: Double labeled: red - Hdac2; green - Dcx (assay MGI:5567092).
Structure Level Pattern Image Note
TS21: olfactory lobe Strong 2H Highly expressed in Dcx-positive neuroblasts of the developing olfactory bulb.

Specimen 2I/J: embryonic day 13.5 (more )
Note: Double labeled: red - Hdac2; green - Dcx (assay MGI:5567092).
Structure Level Pattern Image Note
TS21: hindbrain Present Regionally restricted 2I , 2J Expressed around the 4th Ventricle, extending into the Dcx-positive neuroblasts of the hindbrain. But not detected within most Dcx-negative migrating cells.

Specimen 2K: embryonic day 13.5 (more )
Note: Double labeled: red - Hdac2; green - Rbfox3 (NeuN; assay MGI:5567093).
Structure Level Pattern Image Note
TS21: hindbrain Present 2K Expressed in NeuN-positive neurons.

Specimen 2L/M: embryonic day 13.5 (more )
Note: Double labeled: red - Hdac2; green - Pcna (assay MGI:5566902).
Structure Level Pattern Image Note
TS21: spinal cord Strong Regionally restricted 2L , 2M Highly expressed in neurons located ventrally to the central canal. Occasionally detected in PCNA-positive cells adjacent to the central canal.

Specimen 2N: embryonic day 13.5 (more )
Note: Double labeled: red - Hdac2; green - Rbfox3 (NeuN; assay MGI:5567093).
Structure Level Pattern Image Note
TS21: spinal cord Strong Regionally restricted 2N Highly expressed in NeuN-positive neurons located ventrally to the central canal.

Specimen 4A: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: neocortex layer Strong Widespread 4A Highly expressed throughout the neuronal layers.
TS28: hippocampus Strong Widespread 4A
TS28: corpus callosum Absent 4A

Specimen 4B: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: cerebral cortex Strong Widespread 4B
TS28: main olfactory bulb Strong Widespread 4B
TS28: telencephalon Strong Regionally restricted 4B Highly expressed throughout the neuronal layers of the cortex, hippocampus, olfactory bulb, and cerebellum, but it is rarely detected in the corpus callosum, lateral ventricle, or the rostral migratory stream.
TS28: rostral migratory stream Trace 4B

Specimen 4C: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: cerebellum Strong Widespread 4C

Specimen 4D: postnatal day 7 (more )
Note: Double labeled: red - Hdac2; green - Rbfox3 (NeuN; assay MGI:5567093).
Structure Level Pattern Image Note
TS28: hippocampus Present Widespread 4D Expressed in NeuN-positive neurons throughout the hippocampus.
TS28: dentate gyrus Present 4D Expressed in NeuN-negative immature granule neurons.

Specimen 4E: postnatal day 7 (more )
Note: Double labeled: red - Hdac2; green - Pcna (assay MGI:5566902).
Structure Level Pattern Image Note
TS28: dentate gyrus Present 4E Rarely detected in PCNA-positive cells.

Specimen 4F: postnatal day 7 (more )
Note: Double labeled: red - Hdac2; green - Rbfox3 (NeuN; assay MGI:5567093).
Structure Level Pattern Image Note
TS28: cerebral cortex Present Widespread 4F Expressed in NeuN-positive neurons, and occasional NeuN-negative nuclei.

Specimen 4G: postnatal day 7 (more )
Note: Double labeled: red - Hdac2; green - Rbfox3 (NeuN; assay MGI:5567093).
Structure Level Pattern Image Note
TS28: cerebellum internal granule cell layer Present 4G Expressed in NeuN-positive neurons.
TS28: cerebellum Purkinje cell layer Present 4G Expressed in NeuN-negative neurons.
TS28: cerebellum external granule cell layer Present 4G Expressed in NeuN-negative neurons.
TS28: cerebellum molecular layer Present 4G Expressed in NeuN-negative neurons.

Specimen 4H/I: postnatal day 7 (more )
Note: Double labeled: red - Hdac2; green - Pcna (assay MGI:5566902).
Structure Level Pattern Image Note
TS28: cerebellum external granule cell layer Present Widespread 4I , 4H Expressed in PCNA-positive cells in the outer part as well as in PCNA-negative cells in the inner part.

Specimen 4J/K: postnatal day 7 (more )
Note: Double labeled: red - Hdac2; green - Rbfox3 (NeuN; assay MGI:5567093).
Structure Level Pattern Image Note
TS28: main olfactory bulb Present Widespread 4J , 4K Expressed in NeuN-positive neurons throughout the olfactory bulb, as well as NeuN-negative mitral cells and periglomerular neurons.
TS28: main olfactory bulb glomerular layer Present 4K , 4J
TS28: main olfactory bulb granule cell layer Present 4K , 4J
TS28: main olfactory bulb mitral cell layer Present 4K , 4J

Specimen 4L: postnatal day 7 (more )
Note: Double labeled: red - Hdac2; green - Gfap (assay MGI:5567094).
Structure Level Pattern Image Note
TS28: telencephalon Present Regionally restricted 4L Not expressed in GFAP-positive glia around the dentate gyrus.
TS28: dentate gyrus Present 4L

Specimen 4M/N: postnatal day 7 (more )
Note: Double labeled: red - Hdac2; green - Gfap (assay MGI:5567094).
Structure Level Pattern Image Note
TS28: telencephalon Present Regionally restricted 4M , 4N Not expressed in GFAP-positive glia along the hippocampal formation and corpus callosum.

Specimen 5D: postnatal adult (more )
Structure Level Pattern Image Note
TS28: hippocampus Strong Regionally restricted 5D Expressed in the the neuronal layers.
TS28: cerebral cortex Strong Widespread 5D
TS28: corpus callosum Absent 5D
TS28: hippocampal formation Present Regionally restricted 5D Not expressed in the white matter.

Specimen 5E: postnatal adult (more )
Note: Double labeled: red - Hdac2; green - Rbfox3 (NeuN; assay MGI:5567093).
Structure Level Pattern Image Note
TS28: dentate gyrus Present 5E Expressed in the majority of NeuN-positive neurons.

Specimen 5F: postnatal adult (more )
Note: Double labeled: red - Hdac2; green - Gfap (assay MGI:5567094).
Structure Level Pattern Image Note
TS28: hippocampus Present Regionally restricted 5F Not expressed in GFAP-positive astrocytes in the white matter.

Specimen 5J/K: postnatal adult (more )
Note: Double labeled: red - Hdac2; green - Rbfox3 (NeuN; assay MGI:5567093).
Structure Level Pattern Image Note
TS28: cerebellum Present Widespread 5J Expressed throughout the neuronal layers.
TS28: cerebellum granule cell layer Present Widespread 5J , 5K Expressed in NeuN-positive granule neurons.
TS28: cerebellum Purkinje cell layer Present Widespread 5K , 5J Expressed in NeuN-negative neurons.
TS28: cerebellum molecular layer Present Widespread 5J Expressed in neurons.

Specimen 5L: postnatal adult (more )
Note: Double labeled: red - Hdac2; green - Gfap (assay MGI:5567094).
Structure Level Pattern Image Note
TS28: cerebellum Present 5L Not expressed in GFAP-positive glia around the Purkinje cell layer.

Specimen 5N: postnatal adult (more )
Note: Double labeled: red - Hdac2; green - Rbfox3 (NeuN; assay MGI:5567093).
Structure Level Pattern Image Note
TS28: cerebral cortex Present Widespread 5N Co-expressed with NeuN throughout the cortex.

Specimen 5R: postnatal adult (more )
Structure Level Pattern Image Note
TS28: main olfactory bulb Present Widespread 5R Expressed throughout the neuronal layers.

Specimen 5S: postnatal adult (more )
Note: Double labeled: red - Hdac2; green - Rbfox3 (NeuN; assay MGI:5567093).
Structure Level Pattern Image Note
TS28: main olfactory bulb granule cell layer Present 5S Expressed in NeuN-positive granule neurons.
TS28: main olfactory bulb mitral cell layer Present 5S Expressed in large, NeuN-negative mitral cells.

Specimen 5T: postnatal adult (more )
Note: Double labeled: red - Hdac2; green - Rbfox3 (NeuN; assay MGI:5567093).
Structure Level Pattern Image Note
TS28: main olfactory bulb glomerular layer Present 5T Expressed in the periglomerular neurons.

Specimen 6O: postnatal adult (more )
Note: Double labeled: red - Hdac2; green - Gfap (assay MGI:5567094).
Structure Level Pattern Image Note
TS28: dentate gyrus subgranular zone Present 6O Not expressed in most GFAP-positive progenitors.

Specimen 6P: postnatal adult (more )
Note: Double labeled: red - Hdac2; green - Nes (assay MGI:5566911).
Structure Level Pattern Image Note
TS28: dentate gyrus subgranular zone Present 6P Not expressed in most nestin-positive progenitors.

Specimen 6Q/R: postnatal adult (more )
Note: Double labeled: red - Hdac2; green - Pcna (assay MGI:5566902).
Structure Level Pattern Image Note
TS28: dentate gyrus subgranular zone Present 6R , 6Q Only weakly expressed in some PCNA-positive mitotic progenitors.

Specimen 6S: postnatal adult (more )
Note: Double labeled: red - Hdac2; green - Dcx (assay MGI:5567092).
Structure Level Pattern Image Note
TS28: dentate gyrus subgranular zone Strong 6S Expressed in Dcx-positive neuroblasts.

Specimen 6T: postnatal adult (more )
Note: Double labeled: red - Hdac2; green - Nes (assay MGI:5566911).
Structure Level Pattern Image Note
TS28: telencephalon Present Regionally restricted 6T Not expressed in the nestin-positive progenitors lining the subventricular zone of the lateral ventricle.

Specimen 6U: postnatal adult (more )
Structure Level Pattern Image Note
TS28: rostral migratory stream Present Regionally restricted 6U Expressed in the rostral migratory stream, in which the expression was weak relative to the adjacent neurons.

Specimen 6V/W: postnatal adult (more )
Note: Double labeled: red - Hdac2; green - Pcna (assay MGI:5566902).
Structure Level Pattern Image Note
TS28: rostral migratory stream Present Regionally restricted 6W , 6V Expressed in PCNA-positive progenitors in the rostral migratory stream, in which the expression was weak relative to the adjacent neurons and neuroblasts.

Specimen 6X: postnatal adult (more )
Note: Double labeled: red - Hdac2; green - Dcx (assay MGI:5567092).
Structure Level Pattern Image Note
TS28: rostral migratory stream Present Regionally restricted 6X Expressed in the rostral migratory stream, in which the expression was weak relative to the adjacent Dcx-positive neuroblasts.


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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
05/07/2024
MGI 6.23
The Jackson Laboratory