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Gene Expression Data
Assay Details
Assay
Reference: J:139010 MacDonald JL, et al., Histone deacetylases 1 and 2 are expressed at distinct stages of neuro-glial development. Dev Dyn. 2008 Aug;237(8):2256-67
Assay type: Immunohistochemistry
MGI Accession ID: MGI:5565614
Gene symbol: Hdac1
Gene name: histone deacetylase 1
Antibody: anti-HDAC1
Detection system: Secondary antibody coupled to Alexa Fluor 594
Results
Specimen 1A/C: embryonic day 13.5 (more )
Note: Double labeled: red - Hdac1; green - Pcna (assay MGI:5566902).
Structure Level Pattern Image Note
TS21: telencephalon Strong Graded 1A , 1C Highly expressed in proliferative cells (PCNA positive) around the lateral ventricle, with relative detection decreasing in cells further away.
TS21: midbrain Present Scattered 1A , 1C Only expressed in scattered cells. Not detected in most cells.
TS21: olfactory epithelium Present 1A , 1C Expressed in the proliferative olfactory epithelium (PCNA positive).

Specimen 1D: embryonic day 13.5 (more )
Note: Double labeled: red - Hdac1; green - Pcna (assay MGI:5566902).
Structure Level Pattern Image Note
TS21: telencephalon Strong 1D Highly expressed around the rostral tip.
TS21: olfactory lobe Strong 1D

Specimen 1E: embryonic day 13.5 (more )
Note: Double labeled: red - Hdac1; green - Nes (assay MGI:5566911).
Structure Level Pattern Image Note
TS21: telencephalon Strong 1E Highly expressed around the rostral tip.
TS21: olfactory lobe Strong 1E

Specimen 1F/G: embryonic day 13.5 (more )
Note: Double labeled: red - Hdac1; green - Dcx (assay MGI:5567092).
Structure Level Pattern Image Note
TS21: olfactory lobe Present Regionally restricted 1F , 1G Expression is most robust in cells around the lateral ventricle. Not expressed in Dcx-positive neuroblasts that migrate away from the ventricular zone.

Specimen 1H/I: embryonic day 13.5 (more )
Note: Double labeled: red - Hdac1; green - Pcna (assay MGI:5566902).
Structure Level Pattern Image Note
TS21: spinal cord Present Regionally restricted 1H , 1I Expressed adjacent to the central canal.

Specimen 1J: embryonic day 13.5 (more )
Note: Double labeled: red - Hdac1; green - Rbfox3 (NeuN; assay MGI:5567093).
Structure Level Pattern Image Note
TS21: spinal cord Present Regionally restricted 1J Not expressed in late post-mitotic neurons (NeuN positive).

Specimen 1K: embryonic day 13.5 (more )
Note: Double labeled: red - Hdac1; green - Nes (assay MGI:5566911).
Structure Level Pattern Image Note
TS21: medulla oblongata Strong Regionally restricted 1K Highly expressed around the 4th Ventricle.

Specimen 1L/M: embryonic day 13.5 (more )
Note: Double labeled: red - Hdac1; green - Dcx (assay MGI:5567092).
Structure Level Pattern Image Note
TS21: medulla oblongata Present 1L
TS21: pons Present 1L
TS21: hindbrain Present Regionally restricted 1L , 1M Expressed in chains of nuclei that appear to migrate out from 4th ventricle in channels flanked by Dcx-positive cells.

Specimen 1N: embryonic day 13.5 (more )
Note: Double labeled: red - Hdac1; green - Pcna (assay MGI:5566902).
Structure Level Pattern Image Note
TS21: hindbrain Present 1N Many cells co-express PCNA.

Specimen 3A: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: cerebral cortex Present Scattered 3A
TS28: corpus callosum Present Scattered 3A
TS28: hippocampus Present Scattered 3A

Specimen 3B: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: cerebral cortex Present Scattered 3B
TS28: main olfactory bulb Present Scattered 3B
TS28: telencephalon Present Scattered 3B Expressed in cells around the lateral ventricle.
TS28: rostral migratory stream Present Scattered 3B

Specimen 3C: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: cerebellum Present Scattered 3C Expressed in cells in multiple layers.

Specimen 3D: postnatal day 7 (more )
Note: Double labeled: red - Hdac1; green - Rbfox3 (NeuN; assay MGI:5567093).
Structure Level Pattern Image Note
TS28: dentate gyrus Present 3D Expressed in some NeuN-positive neurons.
TS28: hippocampus CA2 Present 3D Expressed in some NeuN-positive neurons.
TS28: hippocampus CA3 Present 3D Expressed in some NeuN-positive neurons.
TS28: hippocampus CA1 Absent 3D
TS28: hippocampus Present 3D Also expressed in non-neuronal cells around the dentate gyrus.

Specimen 3E: postnatal day 7 (more )
Note: Double labeled: red - Hdac1; green - Pcna (assay MGI:5566902).
Structure Level Pattern Image Note
TS28: dentate gyrus Present 3E Expressed in PCNA-positive cells.

Specimen 3F: postnatal day 7 (more )
Note: Double labeled: red - Hdac1; green - Rbfox3 (NeuN; assay MGI:5567093).
Structure Level Pattern Image Note
TS28: cerebral cortex Present 3F Expressed in small nuclei immediately adjacent to NeuN-positive neurons.

Specimen 3G: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: cerebellum internal granule cell layer Present 3G Not highly detected within the neuronal nuclei.
TS28: cerebellum external granule cell layer Strong 3G Highly expressed in the proliferative progenitors.
TS28: cerebellum Strong Regionally restricted 3G Expressed in the proliferative progenitors of the external granule layer, as well as NeuN-negative cells immediately adjacent to the Purkinje cell layer.

Specimen 3H: postnatal day 7 (more )
Note: Double labeled: red - Hdac1; green - Rbfox3 (NeuN; assay MGI:5567093).
Structure Level Pattern Image Note
TS28: cerebellum Present 3H Expressed in NeuN-negative cells around the Purkinje cell layer.

Specimen 3I: postnatal day 7 (more )
Note: Double labeled: red - Hdac1; green - Nes (assay MGI:5566911).
Structure Level Pattern Image Note
TS28: cerebellum Present 3I Expressed in nestin-positive bergmann glia.

Specimen 3J: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: main olfactory bulb glomerular layer Present Scattered 3J
TS28: main olfactory bulb granule cell layer Present Scattered 3J
TS28: main olfactory bulb mitral cell layer Present Scattered 3J

Specimen 3K: postnatal day 7 (more )
Note: Double labeled: red - Hdac1; green - Rbfox3 (NeuN; assay MGI:5567093).
Structure Level Pattern Image Note
TS28: main olfactory bulb glomerular layer Present Scattered 3K Do not co-express NeuN.
TS28: main olfactory bulb granule cell layer Present Scattered 3K Do not co-express NeuN.
TS28: main olfactory bulb mitral cell layer Present Scattered 3K Do not co-express NeuN.

Specimen 3L: postnatal day 7 (more )
Note: Double labeled: red - Hdac1; green - Gfap (assay MGI:5567094).
Structure Level Pattern Image Note
TS28: telencephalon Present Regionally restricted 3L Coexpressed with GFAP in the white matter surrounding the hippocampal formation.

Specimen 3M/N: postnatal day 7 (more )
Note: Double labeled: red - Hdac1; green - Gfap (assay MGI:5567094).
Structure Level Pattern Image Note
TS28: corpus callosum Present 3M , 3N Coexpressed with GFAP.

Specimen 5A: postnatal adult (more )
Structure Level Pattern Image Note
TS28: cerebral cortex Present Scattered 5A Expressed in scattered cells throughout the cortex.
TS28: hippocampus Present Scattered 5A Expressed in scattered cells throughout the hippocampus, but not the neuronal layers of CA3.
TS28: corpus callosum Present Scattered 5A Expressed in scattered cells throughout the corpus callosum.
TS28: hippocampus CA1 Present 5A
TS28: hippocampus CA2 Present 5A
TS28: hippocampus CA3 Ambiguous 5A Largely absent.

Specimen 5B: postnatal adult (more )
Note: Double labeled: red - Hdac1; green - Rbfox3 (NeuN; assay MGI:5567093).
Structure Level Pattern Image Note
TS28: dentate gyrus Present 5B Expressed in some NeuN-positive neurons, and NeuN-negative cells in the subgranular zone.
TS28: dentate gyrus subgranular zone Present 5B

Specimen 5C: postnatal adult (more )
Note: Double labeled: red - Hdac1; green - Gfap (assay MGI:5567094).
Structure Level Pattern Image Note
TS28: hippocampus Strong 5C Expressed in GFAP-positive glia in the white matter.

Specimen 5G: postnatal adult (more )
Structure Level Pattern Image Note
TS28: cerebellum Present Regionally restricted 5G Expression borders the granule and Purkinje cell layers.

Specimen 5H: postnatal adult (more )
Note: Double labeled: red - Hdac1; green - Rbfox3 (NeuN; assay MGI:5567093).
Structure Level Pattern Image Note
TS28: cerebellum Present Regionally restricted 5H Expression borders the granule and Purkinje cell layers, where it is excluded from NeuN-positive neurons.
TS28: cerebellum granule cell layer Present Scattered 5H Expressed in NeuN-negative cells.

Specimen 5I: postnatal adult (more )
Note: Double labeled: red - Hdac1; green - Gfap (assay MGI:5567094).
Structure Level Pattern Image Note
TS28: cerebellum Present Regionally restricted 5I Expression borders the granule and Purkinje cell layers, where it is co-expressed with GFAP.

Specimen 5M: postnatal adult (more )
Note: Double labeled: red - Hdac1; green - Rbfox3 (NeuN; assay MGI:5567093).
Structure Level Pattern Image Note
TS28: cerebral cortex Present 5M Expressed in non-neuronal cells, and in nuclei adjacent to NeuN-positive neurons.

Specimen 5O: postnatal adult (more )
Note: Double labeled: red - Hdac1; green - Rbfox3 (NeuN; assay MGI:5567093).
Structure Level Pattern Image Note
TS28: main olfactory bulb Present Scattered 5O Expressed in scattered, NeuN-negative non-neuronal cells throughout the olfactory bulb.

Specimen 5P: postnatal adult (more )
Note: Double labeled: red - Hdac1; green - Cnp (assay MGI:5567096).
Structure Level Pattern Image Note
TS28: main olfactory bulb granule cell layer Present 5P A subpopulation co-express the oligodendrocyte marker CNPase.

Specimen 5Q: postnatal adult (more )
Note: Double labeled: red - Hdac1; green - Cnp (assay MGI:5567096).
Structure Level Pattern Image Note
TS28: main olfactory bulb glomerular layer Present 5Q A subpopulation co-express the oligodendrocyte marker CNPase.

Specimen 6A: postnatal adult (more )
Note: Double labeled: red - Hdac1; green - Gfap (assay MGI:5567094).
Structure Level Pattern Image Note
TS28: dentate gyrus subgranular zone Present 6A Expressed in GFAP-positive cells.

Specimen 6B: postnatal adult (more )
Note: Double labeled: red - Hdac1; green - Gfap (assay MGI:5567094).
Structure Level Pattern Image Note
TS28: dentate gyrus subgranular zone Present 6B Expressed in GFAP-positive cells.

Specimen 6C: postnatal adult (more )
Note: Double labeled: red - Hdac1; green - Nes (assay MGI:5566911).
Structure Level Pattern Image Note
TS28: dentate gyrus subgranular zone Present 6C Expressed in nestin-positive progenitors.

Specimen 6D: postnatal adult (more )
Note: Double labeled: red - Hdac1; green - Pcna (assay MGI:5566902).
Structure Level Pattern Image Note
TS28: dentate gyrus subgranular zone Present 6D Expressed in rare actively cycling, PCNA-positive progenitors.

Specimen 6E: postnatal adult (more )
Note: Double labeled: red - Hdac1; green - Dcx (assay MGI:5567092).
Structure Level Pattern Image Note
TS28: dentate gyrus subgranular zone Present 6E Not expressed in Dcx-positive neuroblasts.

Specimen 6F: postnatal adult (more )
Note: Double labeled: red - Hdac1; green - Pcna (assay MGI:5566902).
Structure Level Pattern Image Note
TS28: rostral migratory stream Strong Regionally restricted 6F Expressed in the progenitor regions of the subventricular zone of the lateral ventricle and the rostral migratory stream, which coexpressed PCNA.
TS28: telencephalon subventricular zone Strong Regionally restricted 6F Expressed in the progenitor regions of the subventricular zone of the lateral ventricle and the rostral migratory stream, which coexpressed PCNA.

Specimen 6G: postnatal adult (more )
Note: Double labeled: red - Hdac1; green - Pcna (assay MGI:5566902).
Structure Level Pattern Image Note
TS28: rostral migratory stream Present Regionally restricted 6G Expressed in PCNA-positive cycling progenitors in the rostral migratory stream.

Specimen 6H: postnatal adult (more )
Note: Double labeled: red - Hdac1; green - Dcx (assay MGI:5567092).
Structure Level Pattern Image Note
TS28: rostral migratory stream Present Regionally restricted 6H Expressed along the rostral migratory stream, but not in most Dcx-positive neuroblasts.

Specimen 6I: postnatal adult (more )
Note: Double labeled: red - Hdac1; green - Gfap (assay MGI:5567094).
Structure Level Pattern Image Note
TS28: rostral migratory stream Present Regionally restricted 6I Expressed in GFAP-positive cells lining the rostral migratory stream.

Specimen 6J: postnatal adult (more )
Note: Double labeled: red - Hdac1; green - Gfap (assay MGI:5567094).
Structure Level Pattern Image Note
TS28: telencephalon Strong Regionally restricted 6J Expressed along the subventricular zone of the lateral ventricle, in both GFAP-positive and GFAP-negative progenitors.

Specimen 6K: postnatal adult (more )
Note: Double labeled: red - Hdac1; green - Gfap (assay MGI:5567094).
Structure Level Pattern Image Note
TS28: telencephalon Strong Regionally restricted 6K Expressed along the subventricular zone of the lateral ventricle, in both GFAP-positive and GFAP-negative progenitors.

Specimen 6L: postnatal adult (more )
Note: Double labeled: red - Hdac1; green - Nes (assay MGI:5566911).
Structure Level Pattern Image Note
TS28: telencephalon Present Regionally restricted 6L Expressed along the subventricular zone of the lateral ventricle, in nestin-positive progenitors.

Specimen 6M: postnatal adult (more )
Note: Double labeled: red - Hdac1; green - Pcna (assay MGI:5566902).
Structure Level Pattern Image Note
TS28: telencephalon Present Regionally restricted 6M Expressed along the subventricular zone of the lateral ventricle, in PCNA-positive mitotic progenitors.

Specimen 6N: postnatal adult (more )
Note: Double labeled: red - Hdac1; green - Dcx (assay MGI:5567092).
Structure Level Pattern Image Note
TS28: telencephalon Present Regionally restricted 6N Expressed along the subventricular zone of the lateral ventricle, but not in most Dcx-positive neuroblasts.


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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory