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Gene Expression Data
Assay Details
Assay
Reference: J:28311 Neubuser A, et al., Characterization and developmental expression of Pax9, a paired-box-containing gene related to Pax1. Dev Biol. 1995 Aug;170(2):701-16
Assay type: RNA in situ
MGI Accession ID: MGI:5463485
Gene symbol: Pax9
Gene name: paired box 9
Probe: Pax9 probe1
Probe preparation: Antisense labelled with digoxigenin RNA
Results
Specimen Not shown E8.5: embryonic day 8.5 (more )
Structure Level Pattern Image Note
TS13: foregut diverticulum Present Regionally restricted Expression is in the epithelium of the foregut.

Specimen 4A: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: 1st branchial pouch Strong 4A
TS15: 2nd branchial pouch Strong 4A
TS15: 3rd branchial pouch Strong 4A
TS15: hindgut Strong 4A
TS15: sclerotome Strong 4A
TS15: tail Strong 4A
TS15: trunk mesenchyme Strong 4A Expression is in the mesenchyme underlying the hindgut.
TS15: tail unsegmented mesenchyme Absent 4A

Specimen 4C: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: 1st branchial pouch Strong 4C
TS17: 2nd branchial pouch Strong 4C
TS17: 3rd branchial pouch Strong 4C
TS17: 4th branchial pouch Strong 4C
TS17: hindgut Strong 4C
TS17: nasal process Strong 4C
TS17: head Strong Regionally restricted 4C Expression is at multiple sites withing the nonneural tissues.
TS17: trunk mesenchyme Strong Regionally restricted 4C Expression is in the mesenchyme underlying the hindgut.
TS17: tail Present 4C
TS17: sclerotome Strong 4C Along the entire body axis up to the caudal-most somite.

Specimen 4E: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: footplate Strong Regionally restricted 4E Expression is in the anterior proximal corner.
TS19: handplate Strong Regionally restricted 4E Expression is in the anterior proximal corner.
TS19: 1st branchial pouch Strong 4E
TS19: 2nd branchial pouch Strong 4E
TS19: 3rd branchial pouch Strong 4E
TS19: 4th branchial pouch Strong 4E
TS19: hindgut Strong 4E
TS19: sclerotome Strong 4E
TS19: head Strong Regionally restricted 4E Expression is at multiple sites withing the nonneural tissues.
TS19: trunk mesenchyme Strong Regionally restricted 4E Expression is in the mesenchyme underlying the hindgut.

Specimen 7A: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: axial skeleton tail region Present Regionally restricted 7A Expression is in the intervertebral dics.

Specimen 7B: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: axial skeleton tail region Present Regionally restricted 7B Expression is in the intervertebral dics.
TS22: tail paraxial mesenchyme Present Regionally restricted 7B Expression is in the mesenchyme surrounding the muscle primordia.

Specimen 8A: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: hand Present Regionally restricted 8A Expression is in the anterior proximal corner with weaker expression more posteriorly.

Specimen 8B: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: foot Present Regionally restricted 8B Expression is in the anterior proximal corner with weaker expression more posteriorly.

Specimen 8C: embryonic day 14.0 (more )
Structure Level Pattern Image Note
TS22: hand Strong Regionally restricted 8C Strong in the hand pads and weaker in mesenchyme between metacarpals and ventral to the primordia of the phalangeal bones.

Specimen 8D: embryonic day 14.0 (more )
Structure Level Pattern Image Note
TS22: foot Strong Regionally restricted 8D Expression is anterior to the talus primordium, between the tarsals and metatarsals and ventral to the phalangeal primordia.

Specimen 10E: embryonic day 10.5; Etn2Sd/Etn2Sd (more )
Note: 35-40 somites.
Structure Level Pattern Image Note
TS17: axial skeleton Present Regionally restricted 10E Expression is detected up to the thoracic level but not in the lumbar, sacral, or caudal regions.
TS17: branchial pouch Present 10E Expression is the same as in wild-type.
TS17: nasal process Present 10E Expression is the same as in wild-type.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory