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Gene Expression Data
Assay Details
Assay
Reference: J:162220 Magdaleno S, et al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. PLoS Biol. 2006 Apr;4(4):e86
Assay type: RNA in situ
MGI Accession ID: MGI:4945880
Gene symbol: Cln6
Gene name: ceroid-lipofuscinosis, neuronal 6
Probe: g01896
Probe preparation: Antisense labelled with P33 RNA
Visualized with: Autoradiography
Results
Specimen g01896 E11.5: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: diencephalon Present Scattered g01896_sj_g98_097_e11 , g01896_sj_g98_047_e11
TS19: midbrain Present Scattered g01896_sj_g98_097_e11 , g01896_sj_g98_047_e11
TS19: hindbrain Present Scattered g01896_sj_g98_097_e11 , g01896_sj_g98_047_e11
TS19: future spinal cord Present Scattered g01896_sj_g98_047_e11 , g01896_sj_g98_097_e11
TS19: telencephalon Present Scattered g01896_sj_g98_097_e11 , g01896_sj_g98_047_e11
Specimen g01896 E15.5: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cerebellum Present Widespread g01896_sj_g99_127_e15 , g01896_sj_g99_027_e15 , g01896_sj_g99_077_e15
TS23: ganglionic eminence Present Widespread g01896_sj_g99_077_e15 , g01896_sj_g99_127_e15 , g01896_sj_g99_027_e15
TS23: hindbrain Present Widespread g01896_sj_g99_077_e15 , g01896_sj_g99_027_e15 , g01896_sj_g99_127_e15
TS23: hippocampus Present Widespread g01896_sj_g99_027_e15 , g01896_sj_g99_127_e15 , g01896_sj_g99_077_e15
TS23: hypothalamus Present Widespread g01896_sj_g99_027_e15 , g01896_sj_g99_077_e15 , g01896_sj_g99_127_e15
TS23: midbrain Present Widespread g01896_sj_g99_077_e15 , g01896_sj_g99_027_e15 , g01896_sj_g99_127_e15
TS23: neocortex Present Widespread g01896_sj_g99_127_e15 , g01896_sj_g99_027_e15 , g01896_sj_g99_077_e15
TS23: main olfactory bulb Present Widespread g01896_sj_g99_027_e15 , g01896_sj_g99_127_e15 , g01896_sj_g99_077_e15
TS23: retina Present Regionally restricted g01896_sj_g99_027_e15 , g01896_sj_g99_077_e15 , g01896_sj_g99_127_e15
TS23: spinal cord Present Regionally restricted g01896_sj_g99_127_e15 , g01896_sj_g99_077_e15 , g01896_sj_g99_027_e15 Expression was region specific and scattered.
Specimen g01896 P7: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: amygdala Present Widespread g01896_sj_g109_027_p7 , g01896_sj_g109_127_p7 , g01896_sj_g109_077_p7
TS28: basal ganglia Present Widespread g01896_sj_g109_027_p7 , g01896_sj_g109_077_p7 , g01896_sj_g109_127_p7
TS28: brainstem Present Widespread g01896_sj_g109_127_p7 , g01896_sj_g109_027_p7 , g01896_sj_g109_077_p7
TS28: cerebellum Present Widespread g01896_sj_g109_027_p7 , g01896_sj_g109_077_p7 , g01896_sj_g109_127_p7
TS28: cerebral cortex Present Widespread g01896_sj_g109_077_p7 , g01896_sj_g109_127_p7 , g01896_sj_g109_027_p7
TS28: choroid plexus Present Regionally restricted g01896_sj_g109_127_p7 , g01896_sj_g109_077_p7 , g01896_sj_g109_027_p7
TS28: hippocampus Present Regionally restricted g01896_sj_g109_077_p7 , g01896_sj_g109_127_p7 , g01896_sj_g109_027_p7 Expression was region specific and scattered.
TS28: hypothalamus Present Widespread g01896_sj_g109_077_p7 , g01896_sj_g109_127_p7 , g01896_sj_g109_027_p7
TS28: meninges Present Regionally restricted g01896_sj_g109_077_p7 , g01896_sj_g109_127_p7 , g01896_sj_g109_027_p7
TS28: midbrain Present Widespread g01896_sj_g109_127_p7 , g01896_sj_g109_077_p7 , g01896_sj_g109_027_p7
TS28: main olfactory bulb Present Widespread g01896_sj_g109_027_p7 , g01896_sj_g109_127_p7 , g01896_sj_g109_077_p7
TS28: spinal cord Present Widespread g01896_sj_g109_127_p7 , g01896_sj_g109_077_p7 , g01896_sj_g109_027_p7
TS28: thalamus Present Widespread g01896_sj_g109_077_p7 , g01896_sj_g109_127_p7 , g01896_sj_g109_027_p7
TS28: retina Strong Regionally restricted g01896_sj_g109_077_p7 , g01896_sj_g109_027_p7 , g01896_sj_g109_127_p7
Specimen g01896 Adult: postnatal day 42 (more )
Structure Level Pattern Image Note
TS28: amygdala Present Widespread g01896_sj_g107_077_ads , g01896_sj_g113_077_adc , g01896_sj_g113_027_adc , g01896_sj_g107_127_ads , g01896_sj_g107_027_ads
TS28: basal ganglia Present Widespread g01896_sj_g107_077_ads , g01896_sj_g107_027_ads , g01896_sj_g113_027_adc , g01896_sj_g113_077_adc , g01896_sj_g107_127_ads
TS28: brainstem Present Widespread g01896_sj_g113_027_adc , g01896_sj_g107_027_ads , g01896_sj_g113_077_adc , g01896_sj_g107_077_ads , g01896_sj_g107_127_ads
TS28: cerebellum Present Regionally restricted g01896_sj_g107_127_ads , g01896_sj_g107_077_ads , g01896_sj_g113_027_adc , g01896_sj_g113_077_adc , g01896_sj_g107_027_ads Expression was region specific and scattered.
TS28: cerebral cortex Present Widespread g01896_sj_g107_027_ads , g01896_sj_g113_027_adc , g01896_sj_g107_127_ads , g01896_sj_g113_077_adc , g01896_sj_g107_077_ads
TS28: choroid plexus Present Regionally restricted g01896_sj_g113_077_adc , g01896_sj_g107_027_ads , g01896_sj_g107_127_ads , g01896_sj_g113_027_adc , g01896_sj_g107_077_ads
TS28: hippocampus Present Regionally restricted g01896_sj_g113_027_adc , g01896_sj_g107_127_ads , g01896_sj_g107_077_ads , g01896_sj_g113_077_adc , g01896_sj_g107_027_ads Expression was region specific and scattered.
TS28: hypothalamus Present Widespread g01896_sj_g107_077_ads , g01896_sj_g107_027_ads , g01896_sj_g107_127_ads , g01896_sj_g113_027_adc , g01896_sj_g113_077_adc
TS28: midbrain Present Widespread g01896_sj_g107_077_ads , g01896_sj_g113_077_adc , g01896_sj_g113_027_adc , g01896_sj_g107_027_ads , g01896_sj_g107_127_ads
TS28: main olfactory bulb Present Widespread g01896_sj_g107_127_ads , g01896_sj_g107_077_ads , g01896_sj_g113_027_adc , g01896_sj_g107_027_ads , g01896_sj_g113_077_adc
TS28: retina Present Regionally restricted g01896_sj_g107_027_ads , g01896_sj_g107_127_ads , g01896_sj_g107_077_ads , g01896_sj_g113_027_adc , g01896_sj_g113_077_adc
TS28: spinal cord Present Widespread g01896_sj_g107_127_ads , g01896_sj_g107_077_ads , g01896_sj_g113_027_adc , g01896_sj_g113_077_adc , g01896_sj_g107_027_ads
TS28: thalamus Present Widespread g01896_sj_g113_027_adc , g01896_sj_g113_077_adc , g01896_sj_g107_027_ads , g01896_sj_g107_127_ads , g01896_sj_g107_077_ads
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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04/23/2024
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