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Gene Expression Data
Assay Details
Assay
Reference: J:162220 Magdaleno S, et al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. PLoS Biol. 2006 Apr;4(4):e86
Assay type: RNA in situ
MGI Accession ID: MGI:4945602
Gene symbol: Six3
Gene name: sine oculis-related homeobox 3
Probe: g01135
Probe preparation: Antisense labelled with P33 RNA
Visualized with: Autoradiography
Results
Specimen g01135 E11.5: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: diencephalon Present Regionally restricted g01135_sj_g48_074_e11 , g01135_sj_g48_024_e11 Expression was region specific and scattered.
TS19: midbrain Present Widespread g01135_sj_g48_024_e11 , g01135_sj_g48_074_e11
TS19: hindbrain Present Widespread g01135_sj_g48_024_e11 , g01135_sj_g48_074_e11
TS19: future spinal cord Present Widespread g01135_sj_g48_024_e11 , g01135_sj_g48_074_e11
TS19: telencephalon Present Widespread g01135_sj_g48_074_e11 , g01135_sj_g48_024_e11
Specimen g01135 E15.5: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cerebellum Present Widespread g01135_sj_g48_074_e15 , g01135_sj_g48_024_e15 , g01135_sj_g48_124_e15
TS23: hindbrain Present Widespread g01135_sj_g48_124_e15 , g01135_sj_g48_074_e15 , g01135_sj_g48_024_e15
TS23: hippocampus Present Widespread g01135_sj_g48_024_e15 , g01135_sj_g48_124_e15 , g01135_sj_g48_074_e15
TS23: neocortex Present Widespread g01135_sj_g48_124_e15 , g01135_sj_g48_024_e15 , g01135_sj_g48_074_e15
TS23: main olfactory bulb Present Widespread g01135_sj_g48_024_e15 , g01135_sj_g48_124_e15 , g01135_sj_g48_074_e15
TS23: spinal cord Present Regionally restricted g01135_sj_g48_074_e15 , g01135_sj_g48_124_e15 , g01135_sj_g48_024_e15 Expression was region specific and scattered.
TS23: ganglionic eminence Strong Regionally restricted g01135_sj_g48_024_e15 , g01135_sj_g48_124_e15 , g01135_sj_g48_074_e15 Expression was region specific and scattered.
TS23: hypothalamus Strong Regionally restricted g01135_sj_g48_024_e15 , g01135_sj_g48_124_e15 , g01135_sj_g48_074_e15 Expression was region specific and scattered.
TS23: midbrain Strong Regionally restricted g01135_sj_g48_074_e15 , g01135_sj_g48_024_e15 , g01135_sj_g48_124_e15 Expression was region specific and scattered.
TS23: retina Strong Regionally restricted g01135_sj_g48_124_e15 , g01135_sj_g48_024_e15 , g01135_sj_g48_074_e15
Specimen g01135 P7: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: brainstem Present Widespread g01135_sj_g48_124_p7 , g01135_sj_g48_074_p7 , g01135_sj_g48_024_p7
TS28: cerebellum Present Widespread g01135_sj_g48_124_p7 , g01135_sj_g48_074_p7 , g01135_sj_g48_024_p7
TS28: cerebral cortex Present Widespread g01135_sj_g48_024_p7 , g01135_sj_g48_074_p7 , g01135_sj_g48_124_p7
TS28: choroid plexus Present Regionally restricted g01135_sj_g48_124_p7 , g01135_sj_g48_024_p7 , g01135_sj_g48_074_p7
TS28: hippocampus Present Widespread g01135_sj_g48_024_p7 , g01135_sj_g48_124_p7 , g01135_sj_g48_074_p7
TS28: meninges Present Regionally restricted g01135_sj_g48_024_p7 , g01135_sj_g48_124_p7 , g01135_sj_g48_074_p7
TS28: main olfactory bulb Present Widespread g01135_sj_g48_074_p7 , g01135_sj_g48_024_p7 , g01135_sj_g48_124_p7
TS28: spinal cord Present Widespread g01135_sj_g48_124_p7 , g01135_sj_g48_024_p7 , g01135_sj_g48_074_p7
TS28: amygdala Strong Regionally restricted g01135_sj_g48_124_p7 , g01135_sj_g48_024_p7 , g01135_sj_g48_074_p7 Expression was region specific and scattered.
TS28: basal ganglia Strong Regionally restricted g01135_sj_g48_074_p7 , g01135_sj_g48_124_p7 , g01135_sj_g48_024_p7 Expression was region specific and scattered.
TS28: hypothalamus Strong Regionally restricted g01135_sj_g48_024_p7 , g01135_sj_g48_124_p7 , g01135_sj_g48_074_p7 Expression was region specific and scattered.
TS28: midbrain Strong Regionally restricted g01135_sj_g48_124_p7 , g01135_sj_g48_074_p7 , g01135_sj_g48_024_p7 Expression was region specific and scattered.
TS28: retina Strong Regionally restricted g01135_sj_g48_074_p7 , g01135_sj_g48_024_p7 , g01135_sj_g48_124_p7
TS28: thalamus Strong Widespread g01135_sj_g48_074_p7 , g01135_sj_g48_024_p7 , g01135_sj_g48_124_p7
Specimen g01135 Adult: postnatal day 42 (more )
Structure Level Pattern Image Note
TS28: amygdala Present Widespread g01135_sj_g5_134_ads , g01135_sj_g4_031_adc , g01135_sj_g4_081_adc , g01135_sj_g5_084_ads , g01135_sj_g5_034_ads
TS28: basal ganglia Present Regionally restricted g01135_sj_g5_034_ads , g01135_sj_g4_031_adc , g01135_sj_g5_084_ads , g01135_sj_g4_081_adc , g01135_sj_g5_134_ads Expression was region specific and scattered.
TS28: brainstem Present Widespread g01135_sj_g4_081_adc , g01135_sj_g5_134_ads , g01135_sj_g4_031_adc , g01135_sj_g5_084_ads , g01135_sj_g5_034_ads
TS28: cerebellum Present Regionally restricted g01135_sj_g4_031_adc , g01135_sj_g5_134_ads , g01135_sj_g5_084_ads , g01135_sj_g4_081_adc , g01135_sj_g5_034_ads Expression was region specific and scattered.
TS28: cerebral cortex Present Widespread g01135_sj_g4_081_adc , g01135_sj_g5_084_ads , g01135_sj_g5_034_ads , g01135_sj_g4_031_adc , g01135_sj_g5_134_ads
TS28: choroid plexus Present Regionally restricted g01135_sj_g4_031_adc , g01135_sj_g5_034_ads , g01135_sj_g5_084_ads , g01135_sj_g4_081_adc , g01135_sj_g5_134_ads
TS28: hippocampus Present Regionally restricted g01135_sj_g5_034_ads , g01135_sj_g4_031_adc , g01135_sj_g5_084_ads , g01135_sj_g5_134_ads , g01135_sj_g4_081_adc Expression was region specific and scattered.
TS28: meninges Present Regionally restricted g01135_sj_g4_081_adc , g01135_sj_g5_034_ads , g01135_sj_g4_031_adc , g01135_sj_g5_134_ads , g01135_sj_g5_084_ads
TS28: midbrain Present Regionally restricted g01135_sj_g5_134_ads , g01135_sj_g4_031_adc , g01135_sj_g4_081_adc , g01135_sj_g5_034_ads , g01135_sj_g5_084_ads Expression was region specific and scattered.
TS28: main olfactory bulb Present Regionally restricted g01135_sj_g5_084_ads , g01135_sj_g4_031_adc , g01135_sj_g5_134_ads , g01135_sj_g4_081_adc , g01135_sj_g5_034_ads Expression was region specific and scattered.
TS28: spinal cord Present Widespread g01135_sj_g4_081_adc , g01135_sj_g5_034_ads , g01135_sj_g4_031_adc , g01135_sj_g5_084_ads , g01135_sj_g5_134_ads
TS28: hypothalamus Strong Regionally restricted g01135_sj_g4_031_adc , g01135_sj_g4_081_adc , g01135_sj_g5_034_ads , g01135_sj_g5_134_ads , g01135_sj_g5_084_ads Expression was region specific and scattered.
TS28: retina Strong Regionally restricted g01135_sj_g5_034_ads , g01135_sj_g4_081_adc , g01135_sj_g4_031_adc , g01135_sj_g5_084_ads , g01135_sj_g5_134_ads
TS28: thalamus Strong Regionally restricted g01135_sj_g5_134_ads , g01135_sj_g5_084_ads , g01135_sj_g4_081_adc , g01135_sj_g5_034_ads , g01135_sj_g4_031_adc Expression was region specific and scattered.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
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