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Gene Expression Data
Assay Details
Assay
Reference: J:162220 Magdaleno S, et al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. PLoS Biol. 2006 Apr;4(4):e86
Assay type: RNA in situ
MGI Accession ID: MGI:4945009
Gene symbol: Hoxc5
Gene name: homeobox C5
Probe: g00454
Probe preparation: Antisense labelled with P33 RNA
Visualized with: Autoradiography
Results
Specimen g00454 E11.5: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: diencephalon Present Widespread g00454_sj_g36_063_e11 , g00454_sj_g36_013_e11
TS19: midbrain Present Widespread g00454_sj_g36_063_e11 , g00454_sj_g36_013_e11
TS19: telencephalon Present Widespread g00454_sj_g36_013_e11 , g00454_sj_g36_063_e11
TS19: hindbrain Strong Regionally restricted g00454_sj_g36_013_e11 , g00454_sj_g36_063_e11 Expression was region specific and scattered.
TS19: future spinal cord Strong Regionally restricted g00454_sj_g36_063_e11 , g00454_sj_g36_013_e11 Expression was region specific and scattered.
Specimen g00454 E15.5: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cerebellum Present Widespread g00454_sj_g36_063_e15 , g00454_sj_g36_013_e15 , g00454_sj_g36_113_e15
TS23: ganglionic eminence Present Regionally restricted g00454_sj_g36_113_e15 , g00454_sj_g36_063_e15 , g00454_sj_g36_013_e15 Expression was region specific and scattered.
TS23: hippocampus Present Widespread g00454_sj_g36_063_e15 , g00454_sj_g36_113_e15 , g00454_sj_g36_013_e15
TS23: hypothalamus Present Widespread g00454_sj_g36_063_e15 , g00454_sj_g36_113_e15 , g00454_sj_g36_013_e15
TS23: midbrain Present Widespread g00454_sj_g36_013_e15 , g00454_sj_g36_063_e15 , g00454_sj_g36_113_e15
TS23: neocortex Present Regionally restricted g00454_sj_g36_013_e15 , g00454_sj_g36_063_e15 , g00454_sj_g36_113_e15 Expression was region specific and scattered.
TS23: main olfactory bulb Present Widespread g00454_sj_g36_113_e15 , g00454_sj_g36_013_e15 , g00454_sj_g36_063_e15
TS23: retina Present Regionally restricted g00454_sj_g36_013_e15 , g00454_sj_g36_113_e15 , g00454_sj_g36_063_e15
TS23: spinal cord Present Regionally restricted g00454_sj_g36_113_e15 , g00454_sj_g36_063_e15 , g00454_sj_g36_013_e15 Expression was region specific and scattered.
TS23: hindbrain Strong Regionally restricted g00454_sj_g36_063_e15 , g00454_sj_g36_013_e15 , g00454_sj_g36_113_e15 Expression was region specific and scattered.
Specimen g00454 P7: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: amygdala Present Widespread g00454_sj_g36_013_p7 , g00454_sj_g36_113_p7 , g00454_sj_g36_063_p7
TS28: basal ganglia Present Widespread g00454_sj_g36_063_p7 , g00454_sj_g36_013_p7 , g00454_sj_g36_113_p7
TS28: cerebellum Present Widespread g00454_sj_g36_113_p7 , g00454_sj_g36_013_p7 , g00454_sj_g36_063_p7
TS28: cerebral cortex Present Widespread g00454_sj_g36_063_p7 , g00454_sj_g36_013_p7 , g00454_sj_g36_113_p7
TS28: choroid plexus Present Regionally restricted g00454_sj_g36_113_p7 , g00454_sj_g36_013_p7 , g00454_sj_g36_063_p7
TS28: hippocampus Present Widespread g00454_sj_g36_063_p7 , g00454_sj_g36_113_p7 , g00454_sj_g36_013_p7
TS28: hypothalamus Present Widespread g00454_sj_g36_063_p7 , g00454_sj_g36_013_p7 , g00454_sj_g36_113_p7
TS28: meninges Present Regionally restricted g00454_sj_g36_063_p7 , g00454_sj_g36_013_p7 , g00454_sj_g36_113_p7
TS28: midbrain Present Widespread g00454_sj_g36_063_p7 , g00454_sj_g36_013_p7 , g00454_sj_g36_113_p7
TS28: main olfactory bulb Present Widespread g00454_sj_g36_013_p7 , g00454_sj_g36_113_p7 , g00454_sj_g36_063_p7
TS28: spinal cord Present Regionally restricted g00454_sj_g36_113_p7 , g00454_sj_g36_063_p7 , g00454_sj_g36_013_p7 Expression was region specific and scattered.
TS28: thalamus Present Widespread g00454_sj_g36_013_p7 , g00454_sj_g36_113_p7 , g00454_sj_g36_063_p7
TS28: brainstem Strong Regionally restricted g00454_sj_g36_113_p7 , g00454_sj_g36_013_p7 , g00454_sj_g36_063_p7 Expression was region specific and scattered.
TS28: retina Strong Regionally restricted g00454_sj_g36_063_p7 , g00454_sj_g36_013_p7 , g00454_sj_g36_113_p7
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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04/23/2024
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