About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:162220 Magdaleno S, et al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. PLoS Biol. 2006 Apr;4(4):e86
Assay type: RNA in situ
MGI Accession ID: MGI:4944931
Gene symbol: Htr3a
Gene name: 5-hydroxytryptamine (serotonin) receptor 3A
Probe: g00369
Probe preparation: Antisense labelled with P33 RNA
Visualized with: Autoradiography
Results
Specimen g00369 E11.5: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: diencephalon Present Widespread g00369_sj_g40_017_e11 , g00369_sj_g40_067_e11
TS19: midbrain Present Widespread g00369_sj_g40_067_e11 , g00369_sj_g40_017_e11
TS19: hindbrain Present Widespread g00369_sj_g40_067_e11 , g00369_sj_g40_017_e11
TS19: future spinal cord Present Widespread g00369_sj_g40_067_e11 , g00369_sj_g40_017_e11
TS19: telencephalon Present Widespread g00369_sj_g40_017_e11 , g00369_sj_g40_067_e11
Specimen g00369 E15.5: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cerebellum Present Widespread g00369_sj_g37_088_e15 , g00369_sj_g37_038_e15 , g00369_sj_g37_138_e15
TS23: hindbrain Present Widespread g00369_sj_g37_138_e15 , g00369_sj_g37_038_e15 , g00369_sj_g37_088_e15
TS23: hippocampus Present Widespread g00369_sj_g37_138_e15 , g00369_sj_g37_038_e15 , g00369_sj_g37_088_e15
TS23: midbrain Present Widespread g00369_sj_g37_088_e15 , g00369_sj_g37_138_e15 , g00369_sj_g37_038_e15
TS23: neocortex Present Widespread g00369_sj_g37_138_e15 , g00369_sj_g37_088_e15 , g00369_sj_g37_038_e15
TS23: main olfactory bulb Present Widespread g00369_sj_g37_088_e15 , g00369_sj_g37_038_e15 , g00369_sj_g37_138_e15
TS23: spinal cord Present Widespread g00369_sj_g37_088_e15 , g00369_sj_g37_038_e15 , g00369_sj_g37_138_e15
TS23: ganglionic eminence Strong Regionally restricted g00369_sj_g37_088_e15 , g00369_sj_g37_038_e15 , g00369_sj_g37_138_e15 Expression was region specific and scattered.
TS23: hypothalamus Strong Regionally restricted g00369_sj_g37_088_e15 , g00369_sj_g37_138_e15 , g00369_sj_g37_038_e15 Expression was region specific and scattered.
Specimen g00369 P7: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: amygdala Present Widespread g00369_sj_g37_088_p7 , g00369_sj_g37_138_p7 , g00369_sj_g37_038_p7
TS28: basal ganglia Present Widespread g00369_sj_g37_088_p7 , g00369_sj_g37_138_p7 , g00369_sj_g37_038_p7
TS28: cerebellum Present Widespread g00369_sj_g37_138_p7 , g00369_sj_g37_088_p7 , g00369_sj_g37_038_p7
TS28: cerebral cortex Present Widespread g00369_sj_g37_038_p7 , g00369_sj_g37_088_p7 , g00369_sj_g37_138_p7
TS28: hippocampus Present Regionally restricted g00369_sj_g37_088_p7 , g00369_sj_g37_138_p7 , g00369_sj_g37_038_p7 Expression was region specific and scattered.
TS28: hypothalamus Present Widespread g00369_sj_g37_038_p7 , g00369_sj_g37_088_p7 , g00369_sj_g37_138_p7
TS28: midbrain Present Widespread g00369_sj_g37_138_p7 , g00369_sj_g37_088_p7 , g00369_sj_g37_038_p7
TS28: retina Present Regionally restricted g00369_sj_g37_088_p7 , g00369_sj_g37_138_p7 , g00369_sj_g37_038_p7
TS28: thalamus Present Widespread g00369_sj_g37_038_p7 , g00369_sj_g37_138_p7 , g00369_sj_g37_088_p7
TS28: brainstem Strong Regionally restricted g00369_sj_g37_038_p7 , g00369_sj_g37_088_p7 , g00369_sj_g37_138_p7 Expression was region specific and scattered.
TS28: main olfactory bulb Strong Regionally restricted g00369_sj_g37_138_p7 , g00369_sj_g37_038_p7 , g00369_sj_g37_088_p7 Expression was region specific and scattered.
TS28: spinal cord Strong Regionally restricted g00369_sj_g37_038_p7 , g00369_sj_g37_138_p7 , g00369_sj_g37_088_p7 Expression was region specific and scattered.
Specimen g00369 Adult: postnatal day 42 (more )
Structure Level Pattern Image Note
TS28: basal ganglia Present Widespread g00369_sj_g39_074_ads , g00369_sj_g42_006_adc , g00369_sj_g42_056_adc , g00369_sj_g39_024_ads , g00369_sj_g39_124_ads
TS28: cerebellum Present Regionally restricted g00369_sj_g39_074_ads , g00369_sj_g42_056_adc , g00369_sj_g39_124_ads , g00369_sj_g42_006_adc , g00369_sj_g39_024_ads Expression was region specific and scattered.
TS28: hypothalamus Present Widespread g00369_sj_g39_074_ads , g00369_sj_g42_056_adc , g00369_sj_g42_006_adc , g00369_sj_g39_124_ads , g00369_sj_g39_024_ads
TS28: midbrain Present Widespread g00369_sj_g42_056_adc , g00369_sj_g39_024_ads , g00369_sj_g42_006_adc , g00369_sj_g39_124_ads , g00369_sj_g39_074_ads
TS28: retina Present Regionally restricted g00369_sj_g39_074_ads , g00369_sj_g42_056_adc , g00369_sj_g39_124_ads , g00369_sj_g39_024_ads , g00369_sj_g42_006_adc
TS28: thalamus Present Widespread g00369_sj_g39_024_ads , g00369_sj_g42_056_adc , g00369_sj_g39_074_ads , g00369_sj_g39_124_ads , g00369_sj_g42_006_adc
TS28: amygdala Strong Regionally restricted g00369_sj_g39_124_ads , g00369_sj_g39_074_ads , g00369_sj_g42_006_adc , g00369_sj_g39_024_ads , g00369_sj_g42_056_adc Expression was region specific and scattered.
TS28: brainstem Strong Regionally restricted g00369_sj_g42_056_adc , g00369_sj_g39_024_ads , g00369_sj_g42_006_adc , g00369_sj_g39_074_ads , g00369_sj_g39_124_ads Expression was region specific and scattered.
TS28: cerebral cortex Strong Regionally restricted g00369_sj_g42_006_adc , g00369_sj_g39_074_ads , g00369_sj_g39_124_ads , g00369_sj_g39_024_ads , g00369_sj_g42_056_adc Expression was region specific and scattered.
TS28: hippocampus Strong Regionally restricted g00369_sj_g39_024_ads , g00369_sj_g42_006_adc , g00369_sj_g42_056_adc , g00369_sj_g39_124_ads , g00369_sj_g39_074_ads Expression was region specific and scattered.
TS28: main olfactory bulb Strong Regionally restricted g00369_sj_g39_074_ads , g00369_sj_g39_024_ads , g00369_sj_g42_006_adc , g00369_sj_g42_056_adc , g00369_sj_g39_124_ads Expression was region specific and scattered.
TS28: spinal cord Strong Regionally restricted g00369_sj_g39_024_ads , g00369_sj_g42_056_adc , g00369_sj_g39_124_ads , g00369_sj_g42_006_adc , g00369_sj_g39_074_ads Expression was region specific and scattered.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
05/07/2024
MGI 6.23 		The Jackson Laboratory