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Gene Expression Data
Assay Details
Assay
Reference: J:162220 Magdaleno S, et al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. PLoS Biol. 2006 Apr;4(4):e86
Assay type: RNA in situ
MGI Accession ID: MGI:4944725
Gene symbol: Sox9
Gene name: SRY (sex determining region Y)-box 9
Probe: g00141
Probe preparation: Antisense labelled with P33 RNA
Visualized with: Autoradiography
Results
Specimen g00141 E11.5: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: diencephalon Strong Widespread g00141_sj_g39_052_e11 , g00141_sj_g39_002_e11
TS19: midbrain Strong Widespread g00141_sj_g39_052_e11 , g00141_sj_g39_002_e11
TS19: hindbrain Strong Widespread g00141_sj_g39_052_e11 , g00141_sj_g39_002_e11
TS19: future spinal cord Strong Widespread g00141_sj_g39_052_e11 , g00141_sj_g39_002_e11
TS19: telencephalon Strong Widespread g00141_sj_g39_002_e11 , g00141_sj_g39_052_e11
Specimen g00141 E15.5: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cerebellum Present Regionally restricted g00141_sj_g44_036_e15 , g00141_sj_g44_086_e15 , g00141_sj_g44_136_e15 Expression was region specific and scattered.
TS23: hindbrain Present Regionally restricted g00141_sj_g44_086_e15 , g00141_sj_g44_136_e15 , g00141_sj_g44_036_e15 Expression was region specific and scattered.
TS23: retina Present Regionally restricted g00141_sj_g44_136_e15 , g00141_sj_g44_086_e15 , g00141_sj_g44_036_e15
TS23: spinal cord Present Widespread g00141_sj_g44_136_e15 , g00141_sj_g44_036_e15 , g00141_sj_g44_086_e15
TS23: ganglionic eminence Strong Regionally restricted g00141_sj_g44_136_e15 , g00141_sj_g44_036_e15 , g00141_sj_g44_086_e15 Expression was region specific and scattered.
TS23: hippocampus Strong Regionally restricted g00141_sj_g44_036_e15 , g00141_sj_g44_086_e15 , g00141_sj_g44_136_e15 Expression was region specific and scattered.
TS23: hypothalamus Strong Regionally restricted g00141_sj_g44_136_e15 , g00141_sj_g44_036_e15 , g00141_sj_g44_086_e15 Expression was region specific and scattered.
TS23: midbrain Strong Regionally restricted g00141_sj_g44_036_e15 , g00141_sj_g44_086_e15 , g00141_sj_g44_136_e15 Expression was region specific and scattered.
TS23: neocortex Strong Regionally restricted g00141_sj_g44_086_e15 , g00141_sj_g44_136_e15 , g00141_sj_g44_036_e15 Expression was region specific and scattered.
TS23: main olfactory bulb Strong Regionally restricted g00141_sj_g44_086_e15 , g00141_sj_g44_136_e15 , g00141_sj_g44_036_e15 Expression was region specific and scattered.
Specimen g00141 P7: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: amygdala Present Widespread g00141_sj_g44_136_p7 , g00141_sj_g44_086_p7 , g00141_sj_g44_036_p7
TS28: basal ganglia Present Widespread g00141_sj_g44_036_p7 , g00141_sj_g44_086_p7 , g00141_sj_g44_136_p7
TS28: brainstem Present Widespread g00141_sj_g44_086_p7 , g00141_sj_g44_036_p7 , g00141_sj_g44_136_p7
TS28: cerebral cortex Present Widespread g00141_sj_g44_036_p7 , g00141_sj_g44_136_p7 , g00141_sj_g44_086_p7
TS28: hypothalamus Present Widespread g00141_sj_g44_086_p7 , g00141_sj_g44_036_p7 , g00141_sj_g44_136_p7
TS28: meninges Present Regionally restricted g00141_sj_g44_136_p7 , g00141_sj_g44_036_p7 , g00141_sj_g44_086_p7
TS28: midbrain Present Widespread g00141_sj_g44_086_p7 , g00141_sj_g44_036_p7 , g00141_sj_g44_136_p7
TS28: main olfactory bulb Present Widespread g00141_sj_g44_136_p7 , g00141_sj_g44_036_p7 , g00141_sj_g44_086_p7
TS28: spinal cord Present Widespread g00141_sj_g44_036_p7 , g00141_sj_g44_136_p7 , g00141_sj_g44_086_p7
TS28: thalamus Present Widespread g00141_sj_g44_136_p7 , g00141_sj_g44_086_p7 , g00141_sj_g44_036_p7
TS28: cerebellum Strong Regionally restricted g00141_sj_g44_136_p7 , g00141_sj_g44_086_p7 , g00141_sj_g44_036_p7 Expression was region specific and scattered.
TS28: choroid plexus Strong Regionally restricted g00141_sj_g44_036_p7 , g00141_sj_g44_136_p7 , g00141_sj_g44_086_p7
TS28: hippocampus Strong Regionally restricted g00141_sj_g44_086_p7 , g00141_sj_g44_136_p7 , g00141_sj_g44_036_p7 Expression was region specific and scattered.
TS28: retina Strong Regionally restricted g00141_sj_g44_036_p7 , g00141_sj_g44_086_p7 , g00141_sj_g44_136_p7
Specimen g00141 Adult: postnatal day 42 (more )
Structure Level Pattern Image Note
TS28: amygdala Present Widespread g00141_sj_g46_027_ads , g00141_sj_g1_067_adc , g00141_sj_g1_017_adc , g00141_sj_g46_127_ads , g00141_sj_g46_077_ads
TS28: basal ganglia Present Widespread g00141_sj_g46_127_ads , g00141_sj_g46_027_ads , g00141_sj_g1_017_adc , g00141_sj_g1_067_adc , g00141_sj_g46_077_ads
TS28: brainstem Present Widespread g00141_sj_g46_127_ads , g00141_sj_g1_067_adc , g00141_sj_g1_017_adc , g00141_sj_g46_077_ads , g00141_sj_g46_027_ads
TS28: cerebral cortex Present Widespread g00141_sj_g46_077_ads , g00141_sj_g46_127_ads , g00141_sj_g1_017_adc , g00141_sj_g46_027_ads , g00141_sj_g1_067_adc
TS28: hippocampus Present Widespread g00141_sj_g1_067_adc , g00141_sj_g46_127_ads , g00141_sj_g46_027_ads , g00141_sj_g46_077_ads , g00141_sj_g1_017_adc
TS28: hypothalamus Present Widespread g00141_sj_g46_127_ads , g00141_sj_g46_077_ads , g00141_sj_g1_067_adc , g00141_sj_g46_027_ads , g00141_sj_g1_017_adc
TS28: midbrain Present Widespread g00141_sj_g1_067_adc , g00141_sj_g1_017_adc , g00141_sj_g46_127_ads , g00141_sj_g46_077_ads , g00141_sj_g46_027_ads
TS28: main olfactory bulb Present Widespread g00141_sj_g1_067_adc , g00141_sj_g46_077_ads , g00141_sj_g1_017_adc , g00141_sj_g46_027_ads , g00141_sj_g46_127_ads
TS28: retina Present Regionally restricted g00141_sj_g46_127_ads , g00141_sj_g46_077_ads , g00141_sj_g1_017_adc , g00141_sj_g46_027_ads , g00141_sj_g1_067_adc
TS28: spinal cord Present Widespread g00141_sj_g46_127_ads , g00141_sj_g1_067_adc , g00141_sj_g1_017_adc , g00141_sj_g46_077_ads , g00141_sj_g46_027_ads
TS28: thalamus Present Widespread g00141_sj_g46_077_ads , g00141_sj_g1_067_adc , g00141_sj_g46_027_ads , g00141_sj_g46_127_ads , g00141_sj_g1_017_adc
TS28: cerebellum Strong Regionally restricted g00141_sj_g46_027_ads , g00141_sj_g1_067_adc , g00141_sj_g46_077_ads , g00141_sj_g46_127_ads , g00141_sj_g1_017_adc Expression was region specific and scattered.
TS28: choroid plexus Strong Regionally restricted g00141_sj_g46_027_ads , g00141_sj_g1_017_adc , g00141_sj_g46_077_ads , g00141_sj_g1_067_adc , g00141_sj_g46_127_ads
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/24/2026
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