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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828706
Gene symbol: Thsd7a
Gene name: thrombospondin, type I, domain containing 7A
Probe: T37848
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_013737_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_013737_01
TS23: neural retina Strong Regionally restricted euxassay_013737_01
TS23: hindlimb digit 5 mesenchyme Moderate Regionally restricted euxassay_013737_01
TS23: forelimb digit 4 mesenchyme Moderate Regionally restricted euxassay_013737_01
TS23: forelimb digit 3 mesenchyme Moderate Regionally restricted euxassay_013737_01
Specimen euxassay_013737_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_013737_02
TS23: neural retina Strong Regionally restricted euxassay_013737_02
TS23: hindlimb digit 5 mesenchyme Moderate Regionally restricted euxassay_013737_02
TS23: hindlimb digit 4 mesenchyme Moderate Regionally restricted euxassay_013737_02
TS23: hindlimb digit 3 mesenchyme Moderate Regionally restricted euxassay_013737_02
Specimen euxassay_013737_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_013737_03
TS23: pons mantle layer Strong Regionally restricted euxassay_013737_03
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_013737_03
TS23: trigeminal ganglion Strong Regionally restricted euxassay_013737_03
TS23: neural retina Strong Regionally restricted euxassay_013737_03
TS23: hindlimb digit 4 mesenchyme Moderate Regionally restricted euxassay_013737_03
TS23: hindlimb digit 3 mesenchyme Moderate Regionally restricted euxassay_013737_03
Specimen euxassay_013737_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_013737_04
TS23: pons mantle layer Strong Regionally restricted euxassay_013737_04
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_013737_04
TS23: trigeminal ganglion Strong Regionally restricted euxassay_013737_04
TS23: facial ganglion Strong Regionally restricted euxassay_013737_04
TS23: stomach Moderate Regionally restricted euxassay_013737_04
Specimen euxassay_013737_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_013737_05
TS23: pons mantle layer Strong Regionally restricted euxassay_013737_05
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_013737_05
TS23: trigeminal ganglion Strong Regionally restricted euxassay_013737_05
TS23: facial ganglion Strong Regionally restricted euxassay_013737_05
TS23: stomach Moderate Regionally restricted euxassay_013737_05
Specimen euxassay_013737_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_013737_06
TS23: midbrain mantle layer Strong Regionally restricted euxassay_013737_06
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_013737_06
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_013737_06
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_013737_06
TS23: pons mantle layer Strong Regionally restricted euxassay_013737_06
TS23: trigeminal ganglion Strong Regionally restricted euxassay_013737_06
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_013737_06
TS23: facial ganglion Strong Regionally restricted euxassay_013737_06
TS23: stomach Moderate Regionally restricted euxassay_013737_06
Specimen euxassay_013737_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_013737_07
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_013737_07
TS23: midbrain mantle layer Strong Regionally restricted euxassay_013737_07
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_013737_07
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_013737_07
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_013737_07
TS23: pons mantle layer Strong Regionally restricted euxassay_013737_07
TS23: dorsal root ganglion Strong Regionally restricted euxassay_013737_07
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_013737_07
TS23: trigeminal ganglion Strong Regionally restricted euxassay_013737_07
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_013737_07
TS23: renal calyx Strong Single cells euxassay_013737_07
TS23: stomach Moderate Regionally restricted euxassay_013737_07
Specimen euxassay_013737_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_013737_08
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_013737_08
TS23: midbrain mantle layer Strong Regionally restricted euxassay_013737_08
TS23: medulla oblongata alar plate marginal layer Strong Regionally restricted euxassay_013737_08
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_013737_08
TS23: rest of cerebellum marginal layer Strong Regionally restricted euxassay_013737_08
TS23: pons mantle layer Strong Regionally restricted euxassay_013737_08
TS23: dorsal root ganglion Strong Regionally restricted euxassay_013737_08
TS23: trigeminal ganglion Strong Regionally restricted euxassay_013737_08
TS23: vagus ganglion Strong Regionally restricted euxassay_013737_08
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_013737_08
TS23: olfactory epithelium Strong Single cells euxassay_013737_08
TS23: renal calyx Strong Single cells euxassay_013737_08
TS23: stomach Moderate Regionally restricted euxassay_013737_08
TS23: midgut Moderate Regionally restricted euxassay_013737_08
Specimen euxassay_013737_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_013737_09
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_013737_09
TS23: midbrain mantle layer Strong Regionally restricted euxassay_013737_09
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_013737_09
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_013737_09
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_013737_09
TS23: pons mantle layer Strong Regionally restricted euxassay_013737_09
TS23: spinal cord mantle layer Strong Regionally restricted euxassay_013737_09
TS23: dorsal root ganglion Strong Regionally restricted euxassay_013737_09
TS23: trigeminal ganglion Strong Regionally restricted euxassay_013737_09
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_013737_09
TS23: olfactory epithelium Strong Single cells euxassay_013737_09
TS23: stomach Moderate Regionally restricted euxassay_013737_09
TS23: midgut Moderate Regionally restricted euxassay_013737_09
Specimen euxassay_013737_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_013737_10
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_013737_10
TS23: midbrain mantle layer Strong Regionally restricted euxassay_013737_10
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_013737_10
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_013737_10
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_013737_10
TS23: pons mantle layer Strong Regionally restricted euxassay_013737_10
TS23: spinal cord mantle layer Strong Regionally restricted euxassay_013737_10
TS23: dorsal root ganglion Strong Regionally restricted euxassay_013737_10
TS23: midgut Moderate Regionally restricted euxassay_013737_10
Specimen euxassay_013737_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_013737_11
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_013737_11
TS23: midbrain mantle layer Strong Regionally restricted euxassay_013737_11
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_013737_11
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_013737_11
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_013737_11
TS23: pons mantle layer Strong Regionally restricted euxassay_013737_11
TS23: spinal cord mantle layer Strong Regionally restricted euxassay_013737_11
TS23: olfactory epithelium Strong Single cells euxassay_013737_11
TS23: midgut Moderate Regionally restricted euxassay_013737_11
Specimen euxassay_013737_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_013737_12
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_013737_12
TS23: midbrain mantle layer Strong Regionally restricted euxassay_013737_12
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_013737_12
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_013737_12
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_013737_12
TS23: pons mantle layer Strong Regionally restricted euxassay_013737_12
TS23: spinal cord mantle layer Strong Regionally restricted euxassay_013737_12
TS23: olfactory epithelium Strong Single cells euxassay_013737_12
TS23: midgut Moderate Regionally restricted euxassay_013737_12
TS23: thyroid cartilage Moderate Regionally restricted euxassay_013737_12
Specimen euxassay_013737_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_013737_13
TS23: midbrain mantle layer Strong Regionally restricted euxassay_013737_13
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_013737_13
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_013737_13
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_013737_13
TS23: pons mantle layer Strong Regionally restricted euxassay_013737_13
TS23: spinal cord mantle layer Strong Regionally restricted euxassay_013737_13
TS23: midgut Moderate Regionally restricted euxassay_013737_13
TS23: thyroid cartilage Moderate Regionally restricted euxassay_013737_13
Specimen euxassay_013737_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_013737_14
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_013737_14
TS23: midbrain mantle layer Strong Regionally restricted euxassay_013737_14
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_013737_14
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_013737_14
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_013737_14
TS23: pons mantle layer Strong Regionally restricted euxassay_013737_14
TS23: spinal cord mantle layer Strong Regionally restricted euxassay_013737_14
TS23: midgut Moderate Regionally restricted euxassay_013737_14
TS23: thyroid cartilage Moderate Regionally restricted euxassay_013737_14
Specimen euxassay_013737_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_013737_15
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_013737_15
TS23: midbrain mantle layer Strong Regionally restricted euxassay_013737_15
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_013737_15
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_013737_15
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_013737_15
TS23: pons mantle layer Strong Regionally restricted euxassay_013737_15
TS23: spinal cord mantle layer Strong Regionally restricted euxassay_013737_15
TS23: dorsal root ganglion Strong Regionally restricted euxassay_013737_15
TS23: olfactory epithelium Strong Single cells euxassay_013737_15
TS23: midgut Moderate Regionally restricted euxassay_013737_15
Specimen euxassay_013737_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_013737_16
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_013737_16
TS23: midbrain mantle layer Strong Regionally restricted euxassay_013737_16
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_013737_16
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_013737_16
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_013737_16
TS23: pons mantle layer Strong Regionally restricted euxassay_013737_16
TS23: spinal cord mantle layer Strong Regionally restricted euxassay_013737_16
TS23: dorsal root ganglion Strong Regionally restricted euxassay_013737_16
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_013737_16
TS23: olfactory epithelium Strong Single cells euxassay_013737_16
TS23: midgut Moderate Regionally restricted euxassay_013737_16
Specimen euxassay_013737_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_013737_17
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_013737_17
TS23: midbrain mantle layer Strong Regionally restricted euxassay_013737_17
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_013737_17
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_013737_17
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_013737_17
TS23: pons mantle layer Strong Regionally restricted euxassay_013737_17
TS23: dorsal root ganglion Strong Regionally restricted euxassay_013737_17
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_013737_17
TS23: vagus ganglion Strong Regionally restricted euxassay_013737_17
TS23: trigeminal ganglion Strong Regionally restricted euxassay_013737_17
TS23: renal calyx Strong Single cells euxassay_013737_17
TS23: midgut Moderate Regionally restricted euxassay_013737_17
Specimen euxassay_013737_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_013737_18
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_013737_18
TS23: midbrain mantle layer Strong Regionally restricted euxassay_013737_18
TS23: pons mantle layer Strong Regionally restricted euxassay_013737_18
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_013737_18
TS23: medulla oblongata alar plate mantle layer Strong Regionally restricted euxassay_013737_18
TS23: dorsal root ganglion Strong Regionally restricted euxassay_013737_18
TS23: trigeminal ganglion Strong Regionally restricted euxassay_013737_18
TS23: vagus ganglion Strong Regionally restricted euxassay_013737_18
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_013737_18
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_013737_18
TS23: olfactory epithelium Strong Single cells euxassay_013737_18
TS23: renal calyx Strong Single cells euxassay_013737_18
TS23: midgut Moderate Regionally restricted euxassay_013737_18
Specimen euxassay_013737_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_013737_19
TS23: midbrain mantle layer Strong Regionally restricted euxassay_013737_19
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_013737_19
TS23: pons mantle layer Strong Regionally restricted euxassay_013737_19
TS23: trigeminal ganglion Strong Regionally restricted euxassay_013737_19
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_013737_19
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_013737_19
TS23: olfactory epithelium Strong Single cells euxassay_013737_19
Specimen euxassay_013737_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_013737_20
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_013737_20
TS23: pons mantle layer Strong Regionally restricted euxassay_013737_20
TS23: trigeminal ganglion Strong Regionally restricted euxassay_013737_20
TS23: facial ganglion Strong Regionally restricted euxassay_013737_20
Specimen euxassay_013737_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_013737_21
TS23: pons mantle layer Strong Regionally restricted euxassay_013737_21
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_013737_21
TS23: trigeminal ganglion Strong Regionally restricted euxassay_013737_21
TS23: facial ganglion Strong Regionally restricted euxassay_013737_21
Specimen euxassay_013737_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_013737_22
TS23: trigeminal ganglion Strong Regionally restricted euxassay_013737_22
Specimen euxassay_013737_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_013737_23
TS23: neural retina Strong Regionally restricted euxassay_013737_23
TS23: hindlimb digit 1 mesenchyme Moderate Regionally restricted euxassay_013737_23
TS23: hindlimb digit 2 mesenchyme Moderate Regionally restricted euxassay_013737_23
TS23: hindlimb digit 3 mesenchyme Moderate Regionally restricted euxassay_013737_23
TS23: hindlimb digit 4 mesenchyme Moderate Regionally restricted euxassay_013737_23
TS23: hindlimb digit 5 mesenchyme Moderate Regionally restricted euxassay_013737_23
Specimen euxassay_013737_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_013737_24
TS23: neural retina Strong Regionally restricted euxassay_013737_24
TS23: hindlimb digit 1 mesenchyme Moderate Regionally restricted euxassay_013737_24
TS23: hindlimb digit 2 mesenchyme Moderate Regionally restricted euxassay_013737_24
TS23: hindlimb digit 3 mesenchyme Moderate Regionally restricted euxassay_013737_24
TS23: hindlimb digit 4 mesenchyme Moderate Regionally restricted euxassay_013737_24
TS23: hindlimb digit 5 mesenchyme Moderate Regionally restricted euxassay_013737_24
TS23: forelimb digit 5 mesenchyme Moderate Regionally restricted euxassay_013737_24
TS23: forelimb digit 4 mesenchyme Moderate Regionally restricted euxassay_013737_24
TS23: forelimb digit 3 mesenchyme Moderate Regionally restricted euxassay_013737_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory