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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828244
Gene symbol: Slc4a3
Gene name: solute carrier family 4 (anion exchanger), member 3
Probe: T6319
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen Table S6: embryonic day 14.5 (more )
Note: The probe used to generate this data was not specified; another gene-specific probe may have been used.
Structure Level Pattern Image Note
TS23: cerebral cortex Weak
TS23: thalamus Strong
TS23: hypothalamus Strong
TS23: midbrain Strong
TS23: cerebellum Strong
TS23: pons Strong
TS23: medulla oblongata Strong
TS23: choroid plexus Moderate
Specimen euxassay_007248_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007248_01
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_007248_01
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_007248_01
TS23: trigeminal ganglion Moderate Single cells euxassay_007248_01
Specimen euxassay_007248_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_007248_02
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007248_02
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_007248_02
TS23: trigeminal ganglion Moderate Single cells euxassay_007248_02
Specimen euxassay_007248_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_007248_03
TS23: pons mantle layer Moderate Regionally restricted euxassay_007248_03
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007248_03
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_007248_03
TS23: trigeminal ganglion Moderate Single cells euxassay_007248_03
Specimen euxassay_007248_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_007248_04
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_007248_04
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007248_04
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_007248_04
TS23: pons mantle layer Moderate Regionally restricted euxassay_007248_04
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_007248_04
TS23: trigeminal ganglion Moderate Single cells euxassay_007248_04
Specimen euxassay_007248_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_007248_05
TS23: pons mantle layer Moderate Regionally restricted euxassay_007248_05
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_007248_05
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007248_05
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_007248_05
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_007248_05
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_007248_05
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_007248_05
TS23: trigeminal ganglion Moderate Single cells euxassay_007248_05
TS23: glossopharyngeal ganglion Moderate Single cells euxassay_007248_05
TS23: vestibulo-cochlear ganglion Moderate Single cells euxassay_007248_05
TS23: dorsal root ganglion Weak Regionally restricted euxassay_007248_05
Specimen euxassay_007248_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_007248_06
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_007248_06
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007248_06
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_007248_06
TS23: pons mantle layer Moderate Regionally restricted euxassay_007248_06
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_007248_06
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_007248_06
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_007248_06
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_007248_06
TS23: vagus ganglion Moderate Single cells euxassay_007248_06
TS23: trigeminal ganglion Moderate Single cells euxassay_007248_06
TS23: vestibulo-cochlear ganglion Moderate Single cells euxassay_007248_06
TS23: dorsal root ganglion Weak Regionally restricted euxassay_007248_06
Specimen euxassay_007248_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_007248_07
TS23: pons mantle layer Moderate Regionally restricted euxassay_007248_07
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_007248_07
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007248_07
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_007248_07
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_007248_07
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_007248_07
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_007248_07
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_007248_07
TS23: trigeminal ganglion Moderate Single cells euxassay_007248_07
TS23: dorsal root ganglion Weak Regionally restricted euxassay_007248_07
Specimen euxassay_007248_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_007248_08
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_007248_08
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007248_08
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_007248_08
TS23: pons mantle layer Moderate Regionally restricted euxassay_007248_08
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_007248_08
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_007248_08
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_007248_08
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_007248_08
TS23: trigeminal ganglion Moderate Single cells euxassay_007248_08
TS23: dorsal root ganglion Weak Regionally restricted euxassay_007248_08
Specimen euxassay_007248_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_007248_09
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_007248_09
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_007248_09
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007248_09
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_007248_09
TS23: pons mantle layer Moderate Regionally restricted euxassay_007248_09
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_007248_09
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_007248_09
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_007248_09
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_007248_09
Specimen euxassay_007248_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_007248_10
TS23: pons mantle layer Moderate Regionally restricted euxassay_007248_10
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_007248_10
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_007248_10
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007248_10
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_007248_10
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_007248_10
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_007248_10
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_007248_10
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_007248_10
Specimen euxassay_007248_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_007248_11
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_007248_11
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_007248_11
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007248_11
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_007248_11
TS23: pons mantle layer Moderate Regionally restricted euxassay_007248_11
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_007248_11
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_007248_11
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_007248_11
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_007248_11
Specimen euxassay_007248_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_007248_12
TS23: pons mantle layer Moderate Regionally restricted euxassay_007248_12
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_007248_12
TS23: olfactory cortex mantle layer Moderate Regionally restricted euxassay_007248_12
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_007248_12
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_007248_12
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_007248_12
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_007248_12
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_007248_12
Specimen euxassay_007248_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_007248_13
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_007248_13
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007248_13
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_007248_13
TS23: pons mantle layer Moderate Regionally restricted euxassay_007248_13
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_007248_13
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_007248_13
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_007248_13
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_007248_13
TS23: dorsal root ganglion Weak Regionally restricted euxassay_007248_13
Specimen euxassay_007248_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_007248_14
TS23: pons mantle layer Moderate Regionally restricted euxassay_007248_14
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_007248_14
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_007248_14
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_007248_14
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_007248_14
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_007248_14
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_007248_14
TS23: dorsal root ganglion Weak Regionally restricted euxassay_007248_14
Specimen euxassay_007248_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_007248_15
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_007248_15
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_007248_15
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007248_15
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_007248_15
TS23: pons mantle layer Moderate Regionally restricted euxassay_007248_15
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_007248_15
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_007248_15
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_007248_15
TS23: dorsal root ganglion Weak Regionally restricted euxassay_007248_15
Specimen euxassay_007248_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_007248_16
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_007248_16
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_007248_16
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007248_16
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_007248_16
TS23: pons mantle layer Moderate Regionally restricted euxassay_007248_16
TS23: vagus ganglion Moderate Single cells euxassay_007248_16
TS23: vestibulo-cochlear ganglion Moderate Single cells euxassay_007248_16
TS23: trigeminal ganglion Moderate Single cells euxassay_007248_16
Specimen euxassay_007248_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_007248_17
TS23: pons mantle layer Moderate Regionally restricted euxassay_007248_17
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_007248_17
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007248_17
TS23: trigeminal ganglion Moderate Single cells euxassay_007248_17
TS23: vestibulo-cochlear ganglion Moderate Single cells euxassay_007248_17
TS23: glossopharyngeal ganglion Moderate Single cells euxassay_007248_17
Specimen euxassay_007248_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007248_18
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_007248_18
TS23: trigeminal ganglion Moderate Single cells euxassay_007248_18
TS23: vestibulo-cochlear ganglion Moderate Single cells euxassay_007248_18
Specimen euxassay_007248_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007248_19
TS23: trigeminal ganglion Moderate Single cells euxassay_007248_19
Specimen euxassay_007248_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007248_20
TS23: trigeminal ganglion Moderate Single cells euxassay_007248_20
Specimen euxassay_007248_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007248_21
TS23: trigeminal ganglion Moderate Single cells euxassay_007248_21
Specimen euxassay_007248_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007248_22
Specimen euxassay_007248_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007248_23
Specimen euxassay_007248_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_007248_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
05/14/2024
MGI 6.23 		The Jackson Laboratory