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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827704
Gene symbol: Rftn1
Gene name: raftlin lipid raft linker 1
Probe: MGC clone 62488
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_004681_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_004681_02
Specimen euxassay_004681_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_004681_03
Specimen euxassay_004681_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_004681_04
Specimen euxassay_004681_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_004681_05
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_004681_05
Specimen euxassay_004681_06: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_004681_06
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_004681_06
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_004681_06
TS23: midbrain-hindbrain junction Present euxassay_004681_06
Specimen euxassay_004681_07: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_004681_07
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_004681_07
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_004681_07
TS23: midbrain-hindbrain junction Present euxassay_004681_07
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_004681_07
TS23: dorsal grey horn Moderate Single cells euxassay_004681_07
Specimen euxassay_004681_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_004681_08
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_004681_08
TS23: midbrain-hindbrain junction Present euxassay_004681_08
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_004681_08
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_004681_08
TS23: dorsal grey horn Moderate Single cells euxassay_004681_08
Specimen euxassay_004681_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_004681_09
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_004681_09
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_004681_09
TS23: dorsal grey horn Moderate Single cells euxassay_004681_09
Specimen euxassay_004681_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_004681_10
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_004681_10
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_004681_10
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_004681_10
TS23: dorsal grey horn Moderate Single cells euxassay_004681_10
Specimen euxassay_004681_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_004681_11
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_004681_11
TS23: hypothalamus mantle layer Strong Regionally restricted euxassay_004681_11
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_004681_11
TS23: dorsal grey horn Moderate Single cells euxassay_004681_11
Specimen euxassay_004681_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_004681_12
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_004681_12
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_004681_12
TS23: dorsal grey horn Moderate Single cells euxassay_004681_12
Specimen euxassay_004681_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_004681_13
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_004681_13
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_004681_13
TS23: dorsal grey horn Weak Single cells euxassay_004681_13
Specimen euxassay_004681_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_004681_14
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_004681_14
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_004681_14
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_004681_14
TS23: dorsal grey horn Weak Single cells euxassay_004681_14
Specimen euxassay_004681_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_004681_15
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_004681_15
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_004681_15
TS23: dorsal grey horn Weak Single cells euxassay_004681_15
Specimen euxassay_004681_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_004681_16
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_004681_16
TS23: dorsal grey horn Weak Single cells euxassay_004681_16
Specimen euxassay_004681_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_004681_17
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_004681_17
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_004681_17
Specimen euxassay_004681_18: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_004681_18
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_004681_18
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_004681_18
TS23: midbrain-hindbrain junction Present euxassay_004681_18
Specimen euxassay_004681_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_004681_19
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_004681_19
Specimen euxassay_004681_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_004681_20
Specimen euxassay_004681_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_004681_21
Specimen euxassay_004681_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_004681_22
Specimen euxassay_004681_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon marginal layer Strong Regionally restricted euxassay_004681_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory