About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827344
Gene symbol: Pou6f2
Gene name: POU domain, class 6, transcription factor 2
Probe: T35518
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_009009_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_009009_02
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_009009_02
Specimen euxassay_009009_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_009009_03
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009009_03
TS23: pons mantle layer Moderate Regionally restricted euxassay_009009_03
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_009009_03
Specimen euxassay_009009_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_009009_04
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009009_04
TS23: pons mantle layer Moderate Regionally restricted euxassay_009009_04
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_009009_04
Specimen euxassay_009009_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_009009_05
TS23: midbrain mantle layer Strong Regionally restricted euxassay_009009_05
TS23: pons mantle layer Moderate Regionally restricted euxassay_009009_05
TS23: medulla oblongata basal plate mantle layer Weak Single cells euxassay_009009_05
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_009009_05
Specimen euxassay_009009_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons mantle layer Moderate Regionally restricted euxassay_009009_06
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009009_06
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_009009_06
TS23: medulla oblongata basal plate mantle layer Weak Single cells euxassay_009009_06
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_009009_06
Specimen euxassay_009009_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_009009_07
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009009_07
TS23: pons mantle layer Moderate Regionally restricted euxassay_009009_07
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_009009_07
TS23: ventral grey horn Moderate Single cells euxassay_009009_07
Specimen euxassay_009009_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009009_08
TS23: pons mantle layer Moderate Regionally restricted euxassay_009009_08
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_009009_08
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_009009_08
TS23: ventral grey horn Moderate Single cells euxassay_009009_08
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_009009_08
Specimen euxassay_009009_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009009_09
TS23: pons mantle layer Moderate Regionally restricted euxassay_009009_09
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_009009_09
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_009009_09
TS23: ventral grey horn Moderate Single cells euxassay_009009_09
Specimen euxassay_009009_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009009_10
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_009009_10
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_009009_10
TS23: ventral grey horn Moderate Single cells euxassay_009009_10
TS23: dorsal grey horn Moderate Single cells euxassay_009009_10
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_009009_10
Specimen euxassay_009009_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_009009_11
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_009009_11
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009009_11
TS23: dorsal grey horn Moderate Single cells euxassay_009009_11
TS23: ventral grey horn Moderate Single cells euxassay_009009_11
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_009009_11
Specimen euxassay_009009_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009009_12
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_009009_12
TS23: ventral grey horn Moderate Single cells euxassay_009009_12
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_009009_12
Specimen euxassay_009009_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_009009_13
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_009009_13
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009009_13
TS23: pons mantle layer Moderate Regionally restricted euxassay_009009_13
TS23: ventral grey horn Moderate Single cells euxassay_009009_13
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_009009_13
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_009009_13
Specimen euxassay_009009_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_009009_14
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_009009_14
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009009_14
TS23: pons mantle layer Moderate Regionally restricted euxassay_009009_14
TS23: ventral grey horn Moderate Single cells euxassay_009009_14
TS23: medulla oblongata basal plate mantle layer Moderate Single cells euxassay_009009_14
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_009009_14
Specimen euxassay_009009_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons mantle layer Moderate Regionally restricted euxassay_009009_15
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_009009_15
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_009009_15
TS23: ventral grey horn Moderate Single cells euxassay_009009_15
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_009009_15
Specimen euxassay_009009_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_009009_16
TS23: pons mantle layer Moderate Regionally restricted euxassay_009009_16
TS23: ventral grey horn Moderate Single cells euxassay_009009_16
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_009009_16
Specimen euxassay_009009_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_009009_17
TS23: pons mantle layer Moderate Regionally restricted euxassay_009009_17
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_009009_17
Specimen euxassay_009009_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_009009_20
Specimen euxassay_009009_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_009009_21
Specimen euxassay_009009_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_009009_22
Specimen euxassay_009009_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_009009_23
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_009009_23
Specimen euxassay_009009_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_009009_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory