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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4824488
Gene symbol: Efnb3
Gene name: ephrin B3
Probe: T30545
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_010485_03: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010485_03
TS23: amygdala Present euxassay_010485_03
Specimen euxassay_010485_04: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010485_04
TS23: amygdala Present euxassay_010485_04
Specimen euxassay_010485_05: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010485_05
TS23: amygdala Present euxassay_010485_05
Specimen euxassay_010485_06: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010485_06
TS23: amygdala Present euxassay_010485_06
Specimen euxassay_010485_07: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010485_07
TS23: amygdala Present euxassay_010485_07
TS23: midbrain mantle layer Weak Regionally restricted euxassay_010485_07
Specimen euxassay_010485_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010485_08
TS23: amygdala Present euxassay_010485_08
TS23: midbrain mantle layer Weak Regionally restricted euxassay_010485_08
Specimen euxassay_010485_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hypothalamus mantle layer Weak Regionally restricted euxassay_010485_09
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_010485_09
TS23: midbrain mantle layer Weak Regionally restricted euxassay_010485_09
TS23: dorsal grey horn Strong Regionally restricted euxassay_010485_09
Specimen euxassay_010485_10: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010485_10
TS23: pallidum Present euxassay_010485_10
TS23: hypothalamus mantle layer Weak Regionally restricted euxassay_010485_10
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_010485_10
TS23: midbrain mantle layer Weak Regionally restricted euxassay_010485_10
TS23: dorsal grey horn Strong Regionally restricted euxassay_010485_10
TS23: ventral grey horn Strong Regionally restricted euxassay_010485_10
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_010485_10
Specimen euxassay_010485_11: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010485_11
TS23: telencephalon septum Present euxassay_010485_11
TS23: basal ganglia Present euxassay_010485_11
TS23: olfactory cortex marginal layer Weak Regionally restricted euxassay_010485_11
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_010485_11
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_010485_11
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_010485_11
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_010485_11
TS23: dorsal grey horn Strong Regionally restricted euxassay_010485_11
TS23: ventral grey horn Strong Regionally restricted euxassay_010485_11
TS23: medulla oblongata basal plate mantle layer Strong Regionally restricted euxassay_010485_11
Specimen euxassay_010485_12: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010485_12
TS23: telencephalon septum Present euxassay_010485_12
TS23: basal ganglia Present euxassay_010485_12
TS23: olfactory cortex marginal layer Weak Regionally restricted euxassay_010485_12
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_010485_12
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_010485_12
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_010485_12
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_010485_12
TS23: ventral grey horn Strong Regionally restricted euxassay_010485_12
TS23: dorsal grey horn Strong Regionally restricted euxassay_010485_12
TS23: pons ventricular layer Strong Regionally restricted euxassay_010485_12
Specimen euxassay_010485_13: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010485_13
TS23: telencephalon septum Present euxassay_010485_13
TS23: basal ganglia Present euxassay_010485_13
TS23: olfactory cortex marginal layer Weak Regionally restricted euxassay_010485_13
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_010485_13
TS23: diencephalon lateral wall ventricular layer Strong Regionally restricted euxassay_010485_13
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_010485_13
TS23: midbrain mantle layer Weak Regionally restricted euxassay_010485_13
Specimen euxassay_010485_14: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010485_14 preoptic area
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_010485_14
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_010485_14
TS23: midbrain mantle layer Weak Regionally restricted euxassay_010485_14
Specimen euxassay_010485_15: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010485_15
TS23: telencephalon septum Present euxassay_010485_15
TS23: basal ganglia Present euxassay_010485_15
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_010485_15
TS23: hypothalamus mantle layer Moderate Regionally restricted euxassay_010485_15
TS23: midbrain mantle layer Weak Regionally restricted euxassay_010485_15
Specimen euxassay_010485_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010485_16
TS23: telencephalon septum Present euxassay_010485_16
TS23: basal ganglia Present euxassay_010485_16
TS23: olfactory cortex marginal layer Weak Regionally restricted euxassay_010485_16
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_010485_16
TS23: hypothalamus mantle layer Weak Regionally restricted euxassay_010485_16
TS23: midbrain mantle layer Weak Regionally restricted euxassay_010485_16
Specimen euxassay_010485_17: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010485_17
TS23: telencephalon septum Present euxassay_010485_17
TS23: basal ganglia Present euxassay_010485_17
TS23: olfactory cortex marginal layer Weak Regionally restricted euxassay_010485_17
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_010485_17
TS23: midbrain mantle layer Weak Regionally restricted euxassay_010485_17
Specimen euxassay_010485_18: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010485_18
TS23: pallidum Present euxassay_010485_18
TS23: olfactory cortex marginal layer Weak Regionally restricted euxassay_010485_18
Specimen euxassay_010485_19: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010485_19
TS23: amygdala Present euxassay_010485_19
Specimen euxassay_010485_20: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010485_20
TS23: amygdala Present euxassay_010485_20
Specimen euxassay_010485_21: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010485_21
TS23: amygdala Present euxassay_010485_21
Specimen euxassay_010485_22: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010485_22
TS23: amygdala Present euxassay_010485_22
Specimen euxassay_010485_23: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010485_23
TS23: amygdala Present euxassay_010485_23
Specimen euxassay_010485_24: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010485_24
TS23: amygdala Present euxassay_010485_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
MGI 6.24 		The Jackson Laboratory