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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4822585
Gene symbol: 0610040J01Rik
Gene name: RIKEN cDNA 0610040J01 gene
Probe: MGC clone 8120
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen S6 C/D - 0610040J01Rik: embryonic day 14.5 (more )
Note: This specimen is a merged color composite; it was assumed this image was derived from specimens in this assay. Its annotations were inferred by a GXD curator using the structure key presented in the figure legend.
Structure Level Pattern Image Note
TS23: hippocampus Present S6D Expression is present in the medial pallium.
Specimen S6 E/F - 0610040J01Rik: embryonic day 14.5 (more )
Note: This specimen is a merged color composite; it was assumed this image was derived from specimens in this assay. Its annotations were inferred by a GXD curator using the structure key presented in the figure legend.
Structure Level Pattern Image Note
TS23: hippocampus Present S6F Expression is present in the medial pallium.
Specimen euxassay_006073_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: stomach Weak Regionally restricted euxassay_006073_01
TS23: left lung Moderate Regionally restricted euxassay_006073_01
Specimen euxassay_006073_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: stomach Weak Regionally restricted euxassay_006073_02
TS23: left lung Moderate Regionally restricted euxassay_006073_02
Specimen euxassay_006073_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: stomach Weak Regionally restricted euxassay_006073_03
TS23: left lung Moderate Regionally restricted euxassay_006073_03
TS23: renal calyx Strong Regionally restricted euxassay_006073_03
TS23: cerebral cortex ventricular layer Weak Regionally restricted euxassay_006073_03
Specimen euxassay_006073_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: stomach Moderate Regionally restricted euxassay_006073_04
TS23: left lung Moderate Regionally restricted euxassay_006073_04
TS23: renal calyx Strong Regionally restricted euxassay_006073_04
TS23: cerebral cortex ventricular layer Weak Regionally restricted euxassay_006073_04
Specimen euxassay_006073_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: stomach Moderate Regionally restricted euxassay_006073_05
TS23: left lung Moderate Regionally restricted euxassay_006073_05
TS23: renal calyx Strong Regionally restricted euxassay_006073_05
TS23: submandibular gland primordium Strong Regionally restricted euxassay_006073_05
TS23: pancreas Strong Regionally restricted euxassay_006073_05
TS23: cerebral cortex ventricular layer Weak Regionally restricted euxassay_006073_05
Specimen euxassay_006073_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: stomach Moderate Regionally restricted euxassay_006073_06
TS23: left lung Moderate Regionally restricted euxassay_006073_06
TS23: renal calyx Strong Regionally restricted euxassay_006073_06
TS23: submandibular gland primordium Strong Regionally restricted euxassay_006073_06
TS23: pancreas Strong Regionally restricted euxassay_006073_06
TS23: cerebral cortex ventricular layer Weak Regionally restricted euxassay_006073_06
Specimen euxassay_006073_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Moderate Regionally restricted euxassay_006073_07
TS23: left lung Moderate Regionally restricted euxassay_006073_07
TS23: trachea Moderate Regionally restricted euxassay_006073_07
TS23: cerebral cortex ventricular layer Weak Regionally restricted euxassay_006073_07
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_006073_07
Specimen euxassay_006073_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Moderate Regionally restricted euxassay_006073_08
TS23: hindgut Moderate Regionally restricted euxassay_006073_08
TS23: left lung Moderate Regionally restricted euxassay_006073_08
TS23: trachea Moderate Regionally restricted euxassay_006073_08
TS23: cerebral cortex ventricular layer Weak Regionally restricted euxassay_006073_08
TS23: hypothalamus ventricular layer Strong Regionally restricted euxassay_006073_08
Specimen euxassay_006073_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rectum Moderate Regionally restricted euxassay_006073_09
TS23: hindgut Moderate Regionally restricted euxassay_006073_09
TS23: midgut Moderate Regionally restricted euxassay_006073_09
TS23: right lung Moderate Regionally restricted euxassay_006073_09
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_006073_09
TS23: hypothalamus ventricular layer Weak Regionally restricted euxassay_006073_09
TS23: bladder Moderate Regionally restricted euxassay_006073_09
TS23: urethra Moderate Regionally restricted euxassay_006073_09 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
Specimen euxassay_006073_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Moderate Regionally restricted euxassay_006073_10
TS23: rectum Moderate Regionally restricted euxassay_006073_10
TS23: hindgut Moderate Regionally restricted euxassay_006073_10
TS23: right lung Moderate Regionally restricted euxassay_006073_10
TS23: pancreas Strong Regionally restricted euxassay_006073_10
TS23: olfactory cortex marginal layer Weak Regionally restricted euxassay_006073_10
TS23: hypothalamus ventricular layer Weak Regionally restricted euxassay_006073_10
TS23: bladder Moderate Regionally restricted euxassay_006073_10
TS23: urethra Moderate Regionally restricted euxassay_006073_10 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
Specimen euxassay_006073_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Moderate Regionally restricted euxassay_006073_11
TS23: hindgut Moderate Regionally restricted euxassay_006073_11
TS23: right lung Moderate Regionally restricted euxassay_006073_11
TS23: renal calyx Strong Regionally restricted euxassay_006073_11
TS23: pancreas Strong Regionally restricted euxassay_006073_11
TS23: olfactory cortex marginal layer Weak Regionally restricted euxassay_006073_11
TS23: hypothalamus ventricular layer Weak Regionally restricted euxassay_006073_11
Specimen euxassay_006073_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Moderate Regionally restricted euxassay_006073_12
TS23: right lung Moderate Regionally restricted euxassay_006073_12
TS23: renal calyx Strong Regionally restricted euxassay_006073_12
TS23: olfactory cortex marginal layer Weak Regionally restricted euxassay_006073_12
TS23: hypothalamus ventricular layer Weak Regionally restricted euxassay_006073_12
Specimen euxassay_006073_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Moderate Regionally restricted euxassay_006073_13
TS23: hindgut Moderate Regionally restricted euxassay_006073_13
TS23: right lung Moderate Regionally restricted euxassay_006073_13
TS23: renal calyx Strong Regionally restricted euxassay_006073_13
TS23: submandibular gland primordium Strong Regionally restricted euxassay_006073_13
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_006073_13
Specimen euxassay_006073_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Moderate Regionally restricted euxassay_006073_14
TS23: right lung Moderate Regionally restricted euxassay_006073_14
TS23: renal calyx Strong Regionally restricted euxassay_006073_14
TS23: submandibular gland primordium Strong Regionally restricted euxassay_006073_14
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_006073_14
TS23: olfactory cortex marginal layer Weak Regionally restricted euxassay_006073_14
Specimen euxassay_006073_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Moderate Regionally restricted euxassay_006073_15
TS23: right lung Moderate Regionally restricted euxassay_006073_15
TS23: submandibular gland primordium Strong Regionally restricted euxassay_006073_15
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_006073_15
TS23: olfactory cortex marginal layer Weak Regionally restricted euxassay_006073_15
TS23: cerebral cortex ventricular layer Moderate Regionally restricted euxassay_006073_15
Specimen euxassay_006073_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Moderate Regionally restricted euxassay_006073_16
TS23: right lung Moderate Regionally restricted euxassay_006073_16
TS23: olfactory cortex marginal layer Moderate Regionally restricted euxassay_006073_16
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_006073_16
TS23: cerebral cortex ventricular layer Moderate Regionally restricted euxassay_006073_16
Specimen euxassay_006073_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Moderate Regionally restricted euxassay_006073_17
TS23: right lung Moderate Regionally restricted euxassay_006073_17
TS23: olfactory cortex marginal layer Weak Regionally restricted euxassay_006073_17
TS23: cerebral cortex ventricular layer Weak Regionally restricted euxassay_006073_17
Specimen euxassay_006073_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: right lung Moderate Regionally restricted euxassay_006073_18
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory