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Gene Expression Data
Assay Details
Assay
Reference: J:91257 Gray PA, et al., Mouse Brain Organization Revealed Through Direct Genome-Scale TF Expression Analysis. Science. 2004 Dec 24;306(5705):2255-2257
Assay type: RNA in situ
MGI Accession ID: MGI:3507922
Gene symbol: Irf9
Gene name: interferon regulatory factor 9
Probe: MTF#723
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Additional electronic submission not included in Supplemental Table 4 of the publication. Results obtained using this probe were the same as probe MTF#563 (MGI:3506279).
Results
Specimen 1: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: head Ambiguous MTF# E 723 Image Expression was low or absent.
TS21: central nervous system Absent MTF# E 723 Image
TS21: cerebral cortex Absent MTF# E 723 Image
TS21: corpus striatum Absent MTF# E 723 Image
TS21: thalamus Absent MTF# E 723 Image
TS21: hypothalamus Absent MTF# E 723 Image
TS21: midbrain Absent MTF# E 723 Image
TS21: hindbrain Absent MTF# E 723 Image
TS21: spinal cord Absent MTF# E 723 Image
TS21: cranial ganglion Absent MTF# E 723 Image
TS21: dorsal root ganglion Absent MTF# E 723 Image
TS21: brain ventricular layer Absent MTF# E 723 Image
TS21: retina Absent MTF# E 723 Image
TS21: ear Absent MTF# E 723 Image The tissue was inner ear and ear structures.
TS21: olfactory lobe Absent MTF# E 723 Image The tissue was olfactory epithelium and/or bulb.
Specimen 2: postnatal newborn (more )
Structure Level Pattern Image Note
TS27: head Absent MTF# P 723 Image
TS27: central nervous system Absent MTF# P 723 Image
TS27: cerebral cortex Absent MTF# P 723 Image
TS27: corpus striatum Absent MTF# P 723 Image
TS27: thalamus Absent MTF# P 723 Image
TS27: hypothalamus Absent MTF# P 723 Image
TS27: midbrain Absent MTF# P 723 Image
TS27: cerebellum Absent MTF# P 723 Image
TS27: hindbrain Absent MTF# P 723 Image
TS27: spinal cord Absent MTF# P 723 Image
TS27: cranial ganglion Absent MTF# P 723 Image
TS27: dorsal root ganglion Absent MTF# P 723 Image
TS27: brain ventricular layer Absent MTF# P 723 Image
TS27: retina Absent MTF# P 723 Image
TS27: ear Absent MTF# P 723 Image The tissue was inner ear and ear structures.
TS27: main olfactory bulb Absent MTF# P 723 Image The tissue was olfactory epithelium and/or bulb.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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04/23/2024
MGI 6.23 		The Jackson Laboratory