About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:91257 Gray PA, et al., Mouse Brain Organization Revealed Through Direct Genome-Scale TF Expression Analysis. Science. 2004 Dec 24;306(5705):2255-2257
Assay type: RNA in situ
MGI Accession ID: MGI:3507731
Gene symbol: Hoxd1
Gene name: homeobox D1
Probe: MTF#462
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 1: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: head Present MTF# E 462 Image Expression was detected in neural and non-neural tissue.
TS21: central nervous system Present Single cells MTF# E 462 Image Expression was detected in some cells.
TS21: cerebral cortex Absent MTF# E 462 Image
TS21: corpus striatum Absent MTF# E 462 Image
TS21: thalamus Absent MTF# E 462 Image
TS21: hypothalamus Absent MTF# E 462 Image
TS21: midbrain Absent MTF# E 462 Image
TS21: hindbrain Absent MTF# E 462 Image
TS21: spinal cord Absent MTF# E 462 Image
TS21: cranial ganglion Present Single cells MTF# E 462 Image Expression was detected in some cells.
TS21: dorsal root ganglion Present Single cells MTF# E 462 Image Expression was detected in some cells.
TS21: brain ventricular layer Absent MTF# E 462 Image
TS21: retina Absent MTF# E 462 Image
TS21: ear Absent MTF# E 462 Image The tissue was inner ear and ear structures.
TS21: olfactory lobe Absent MTF# E 462 Image The tissue was olfactory epithelium and/or bulb.
Specimen 2: postnatal newborn (more )
Structure Level Pattern Image Note
TS27: head Present Regionally restricted MTF# P 462 Image Expression was neural specific.
TS27: central nervous system Present Single cells MTF# P 462 Image Expression was detected in some cells.
TS27: cerebral cortex Absent MTF# P 462 Image
TS27: corpus striatum Absent MTF# P 462 Image
TS27: thalamus Absent MTF# P 462 Image
TS27: hypothalamus Absent MTF# P 462 Image
TS27: midbrain Absent MTF# P 462 Image
TS27: cerebellum Absent MTF# P 462 Image
TS27: hindbrain Absent MTF# P 462 Image
TS27: spinal cord Absent MTF# P 462 Image
TS27: cranial ganglion Present Single cells MTF# P 462 Image Expression was detected in some cells.
TS27: dorsal root ganglion Present Single cells MTF# P 462 Image Expression was detected in some cells.
TS27: brain ventricular layer Absent MTF# P 462 Image
TS27: retina Absent MTF# P 462 Image
TS27: ear Absent MTF# P 462 Image The tissue was inner ear and ear structures.
TS27: main olfactory bulb Absent MTF# P 462 Image The tissue was olfactory epithelium and/or bulb.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory