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Gene Expression Data
Assay Details
Assay
Reference: J:16332 Koseki H, et al., A role for Pax-1 as a mediator of notochordal signals during the dorsoventral specification of vertebrae. Development. 1993 Nov;119(3):649-60
Assay type: RNA in situ
MGI Accession ID: MGI:1343582
Gene symbol: Pax1
Gene name: paired box 1
Probe: Pax1 probe3
Probe preparation: Antisense RNA
Visualized with: Autoradiography
Results
Specimen 2.A/B: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: vertebral cartilage condensation Present 2A/B Expression was detected in more than 40 segmental domains along the developing vertebral column.
TS21: upper jaw mesenchyme Present 2A/B
TS21: lower jaw mesenchyme Present 2A/B
TS21: thymus primordium Present 2A/B
TS21: rib cartilage condensation Present Regionally restricted 2A/B Expression was detected in the proximal part of the ribs.
TS21: limb Present Regionally restricted 2A/B Expression was detected in the limb buds.
TS21: axial skeleton Present Regionally restricted 2A/B Expression is in the future sternum.

Specimen 2.C/D: embryonic day 13.5; Etn2Sd/Etn2Sd (more )
Structure Level Pattern Image Note
TS21: thoracic vertebral cartilage condensation Present Regionally restricted 2C/D Expression stopped abruptly in the thoracic region of the mutant. In three embryos analyzed, only 14,17 and 18 expressing domains were found.

Specimen 2.E/F: embryonic day 13.5; Etn2Sd/Etn2Sd (more )
Structure Level Pattern Image Note
TS21: thoracic vertebral cartilage condensation Present Regionally restricted 2E/F Expression stopped abruptly in the thoracic region.

Specimen 3.A: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: 1st branchial pouch Present 3A
TS17: forelimb bud Present 3A
TS17: trunk paraxial mesenchyme Present 3A Expression was observed along the entire body axis from the occipital bone anlage to the newly generated somites in the tail region. Expression was stronger in the caudal half and a small area in the most cranial part of each segmental unit.

Specimen 3.B: embryonic day 10.5; Etn2Sd/Etn2Sd (more )
Structure Level Pattern Image Note
TS17: 1st branchial pouch Present 3B No difference in expression pattern was seen compared to wild-type.
TS17: forelimb bud Present 3B No difference in expression pattern was seen compared to wild-type.
TS17: hindlimb bud Present 3B No difference in expression pattern was seen compared to wild-type.
TS17: trunk paraxial mesenchyme Present 3B No difference in expression pattern was seen in the cervical region. Expression was seen up to the thoracic region and could not be observed in the lumbar, sacral or caudal regions.
TS17: trunk sclerotome Present 3B In seven Sd homozygotes the number of expressing sclerotomes starting from the proatlas anlage was 17 on average. This is similar to what was observed in day 13.5 wild-type embryos.

Specimen 5.A: embryonic day 10.5; Etn2Sd/Etn2Sd (more )
Structure Level Pattern Image Note
TS17: mesenchyme derived from head mesoderm Present Regionally restricted 5A Expression is in the cranial part.
TS17: forelimb bud Present 5A
TS17: trunk mesenchyme Present Regionally restricted 5A Expression is in the lateral mesoderm.
TS17: tail paraxial mesenchyme Absent 5A

Specimen 5.D: embryonic day 10.5; Etn2Sd/Etn2Sd (more )
Structure Level Pattern Image Note
TS17: trunk sclerotome Present Regionally restricted 5D Expression can be seen up to the 18th sclerotome.
TS17: somite 16 sclerotome Present 5D
TS17: somite 17 sclerotome Weak 5D
TS17: somite 18 sclerotome Weak 5D
TS17: somite 19 sclerotome Absent 5D
TS17: somite 20 sclerotome Absent 5D


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory