Gene Expression Data
Assay Details
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Assay
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Reference:
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J:50401
Bel S, et al., Genetic interactions and dosage effects of Polycomb group genes in mice. Development. 1998 Sep;125(18):3543-51
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Assay type:
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RNA in situ
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MGI Accession ID:
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MGI:1331667
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Gene symbol:
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Hoxc9
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Gene name:
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homeobox C9
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Probe:
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Hoxc9 probe2
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Probe preparation:
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labelled with digoxigenin RNA
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Results
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Specimen
3A:
embryonic day 9.5
(more  )
Note: 28-30 somites.
Specimen
3A:
(close  )
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Genetic Background:
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Not Specified
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Age:
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embryonic day 9.5
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Sex:
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Not Specified
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Type:
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whole mount
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Fixation:
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4% Paraformaldehyde
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Note:
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28-30 somites.
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| Structure |
Level |
Pattern |
Image |
Note |
| TS15: neural tube |
Present |
Regionally restricted |
3A
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Normal boundaries for Hoxc9 are s17/16 in the mesoderm and s10/9 in the neural tube.
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| TS15: trunk paraxial mesenchyme |
Present |
Regionally restricted |
3A
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Normal boundaries for Hoxc9 are s17/16 in the mesoderm and s10/9 in the neural tube.
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Specimen
3B:
(close )
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Genetic Background:
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involves: 129P2/OlaHsd * BALB/c * C57BL/6
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Mutant Allele(s):
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Bmi1tm1Brn/Bmi1+
Cbx2tm1Cim/Cbx2+
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Age:
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embryonic day 9.5
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Sex:
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Not Specified
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Type:
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whole mount
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Fixation:
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4% Paraformaldehyde
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Note:
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28-30 somites.
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| Structure |
Level |
Pattern |
Image |
Note |
| TS15: neural tube |
Present |
Regionally restricted |
3B
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The boundary of expression is not affected in the trans-heterozygote embryos.
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| TS15: trunk paraxial mesenchyme |
Present |
Regionally restricted |
3B
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The boundary of expression is not affected in the trans-heterozygote embryos.
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Specimen
3C:
(close )
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Genetic Background:
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involves: 129P2/OlaHsd * C57BL/6
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Mutant Allele(s):
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Bmi1tm1Brn/Bmi1tm1Brn
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Age:
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embryonic day 9.5
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Sex:
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Not Specified
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Type:
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whole mount
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Fixation:
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4% Paraformaldehyde
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Note:
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28-30 somites.
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Specimen
3D:
(close )
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Genetic Background:
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involves: 129P2/OlaHsd * BALB/c * C57BL/6
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Mutant Allele(s):
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Bmi1tm1Brn/Bmi1+
Cbx2tm1Cim/Cbx2tm1Cim
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Age:
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embryonic day 9.5
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Sex:
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Not Specified
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Type:
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whole mount
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Fixation:
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4% Paraformaldehyde
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Note:
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28-30 somites.
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Specimen
3E:
(close )
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Genetic Background:
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involves: 129P2/OlaHsd * BALB/c * C57BL/6
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Mutant Allele(s):
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Bmi1tm1Brn/Bmi1tm1Brn
Cbx2tm1Cim/Cbx2+
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Age:
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embryonic day 9.5
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Sex:
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Not Specified
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Type:
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whole mount
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Fixation:
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4% Paraformaldehyde
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Note:
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28-30 somites.
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| Structure |
Level |
Pattern |
Image |
Note |
| TS15: neural tube |
Present |
Regionally restricted |
3E
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A 1-segment anterior shift is detected up to pv15 in the paraxial mesoderm.
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| TS15: trunk paraxial mesenchyme |
Present |
Regionally restricted |
3E
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A 1-segment anterior shift is detected up to pv15 in the paraxial mesoderm.
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Specimen
3F:
(close )
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Genetic Background:
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involves: 129P2/OlaHsd * BALB/c * C57BL/6
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Mutant Allele(s):
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Bmi1tm1Brn/Bmi1tm1Brn
Cbx2tm1Cim/Cbx2tm1Cim
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Age:
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embryonic day 9.5
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Sex:
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Not Specified
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Type:
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whole mount
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Fixation:
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4% Paraformaldehyde
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Note:
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28-30 somites.
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| Structure |
Level |
Pattern |
Image |
Note |
| TS15: neural tube |
Present |
Regionally restricted |
3F
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The expression pattern of Hoxc9 is shifted anteriorly by 4 segments, up to pv11 in the somitic mesoderm while it is not affected in the neurectoderm.
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| TS15: trunk paraxial mesenchyme |
Present |
Regionally restricted |
3F
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The expression pattern of Hoxc9 is shifted anteriorly by 4 segments, up to pv11 in the somitic mesoderm while it is not affected in the neurectoderm.
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Specimen
3G:
embryonic day 9.5
(more )
Note: 20-somites.
Specimen
3G:
(close )
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Genetic Background:
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Not Specified
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Age:
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embryonic day 9.5
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Sex:
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Not Specified
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Type:
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whole mount
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Fixation:
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4% Paraformaldehyde
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Note:
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20-somites.
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Specimen
3H:
(close )
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Genetic Background:
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involves: 129P2/OlaHsd * BALB/c * C57BL/6
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Mutant Allele(s):
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Bmi1tm1Brn/Bmi1tm1Brn
Cbx2tm1Cim/Cbx2tm1Cim
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Age:
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embryonic day 9.5
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Sex:
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Not Specified
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Type:
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whole mount
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Fixation:
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4% Paraformaldehyde
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Note:
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20-somites.
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| Structure |
Level |
Pattern |
Image |
Note |
| TS14: head paraxial mesenchyme |
Present |
Regionally restricted |
3H
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An anterior shift is detected not only in the mesoderm but also in the neurectoderm.
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| TS14: neural tube |
Present |
Regionally restricted |
3H
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An anterior shift is detected not only in the mesoderm but also in the neurectoderm.
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| TS14: optic vesicle neural ectoderm |
Present |
Regionally restricted |
3H
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An anterior shift is detected not only in the mesoderm but also in the neurectoderm.
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Specimen
not shown:
(close )
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Genetic Background:
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involves: 129P2/OlaHsd * BALB/c
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Mutant Allele(s):
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Cbx2tm1Cim/Cbx2tm1Cim
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Age:
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embryonic day 9.5
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Sex:
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Not Specified
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Type:
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whole mount
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Fixation:
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4% Paraformaldehyde
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| Structure |
Level |
Pattern |
Image |
Note |
| TS15: neural tube |
Present |
Regionally restricted |
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Boundaries for Hoxc9 are s17/16 in the mesoderm and s10/9 in the neural tube.
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| TS15: trunk paraxial mesenchyme |
Present |
Regionally restricted |
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Boundaries for Hoxc9 are s17/16 in the mesoderm and s10/9 in the neural tube.
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Analysis Tools