rs8279385 SNP Detail

Summary

• ID
  rs8279385
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118997804 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGCAA ATTAAGTCTG TGCATCATCT
  R
  CACTCTTGGC TGGGTGCCAG TCCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12776831	Gfrp_JC8524_5	ROCHEBIO	RPAMM	f	SNP	G		G	G	G	G	G	G	A	G	G		A	G	G		G
ss147324343	ENSMUSSNP1891192	ENSEMBL	ENSEMBL_Sanger	r	SNP		C									C
ss320473940	CHEV_2_118993059	CHEVERUD	SCREENING_POP	r	SNP												T				C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8279385					SNP	G	G	G	G	G	G	G	G	A	G	G	A	A	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118997804 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12107	CpG island 12107	within coordinates
Gchfr	GTP cyclohydrolase I feedback regulator	465 bp upstream
Rr563425	regulatory region 563425	1709 bp distal
Rr563426	regulatory region 563426	within coordinates
Rr563427	regulatory region 563427	292 bp proximal
Rr563428	regulatory region 563428	461 bp proximal
Tssr19604	transcription start site region 19604	435 bp upstream
Tssr19605	transcription start site region 19605	459 bp upstream