rs8279381 SNP Detail

Summary

• ID
  rs8279381
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118998285 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GCTGG GGCTGCCCGC GACCACAGTC
  Y
  CGTTACTCCC TGCTCTGTCC GCGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12776827	Gfrp_JC8524_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8279381					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118998285 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12107	CpG island 12107	within coordinates
Gchfr	GTP cyclohydrolase I feedback regulator	mRNA-UTR
Rr563426	regulatory region 563426	21 bp distal
Rr563427	regulatory region 563427	168 bp distal
Rr563428	regulatory region 563428	within coordinates
Tssr19604	transcription start site region 19604	25 bp downstream
Tssr19605	transcription start site region 19605	within coordinates