rs8279375 SNP Detail

Summary

• ID
  rs8279375
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118996390 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TACTT CAGAGACTGA GGCAGGAGAA
  K
  CACTTGAACT TGCAAGCTAA AGACC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12776821	Gfrp_JC8523_8	ROCHEBIO	RPAMM	f	SNP	T		T	T	T	G	T	T	T	G	T	T		G	T	T		T
ss147324287	ENSMUSSNP6122460	ENSEMBL	ENSEMBL_Sanger	r	SNP		A		A								A
ss320473927	CHEV_2_118991645	CHEVERUD	SCREENING_POP	r	SNP													C				A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8279375					SNP	T	T	T	T	T	G	T	T	T	G	T	T	G	G	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118996390 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12107	CpG island 12107	1413 bp proximal
Gchfr	GTP cyclohydrolase I feedback regulator	1879 bp upstream
Rr563425	regulatory region 563425	295 bp distal
Rr563426	regulatory region 563426	1374 bp proximal
Rr563427	regulatory region 563427	1706 bp proximal
Rr563428	regulatory region 563428	1875 bp proximal
Tssr19604	transcription start site region 19604	1849 bp upstream
Tssr19605	transcription start site region 19605	1873 bp upstream