rs8279373 SNP Detail

Summary

• ID
  rs8279373
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118996506 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                    CTTT TGAAGGTTAT
  AGACAGTTTT CAGGAGCTGG CTCTCTCCTC CCACTGTGTG GGTTCCAGGG CTCAAANTCA
  GGTTCTCAGG TTTGGCAGCA AGACCTTAAC CAGTGAGCCA GTAAANTTNN TNTTTATACC
  M
  CCAGACACTG CCTTACAGAG AGCAAAAAAA AAAAGAAGGA ATGTACAATG TATGAGAATT
  Tccaggtgtg tggtgcatgg ctgtggttcc agctacttca gagactgang caggagaanc
  acttgaactt gcaagctaaa gaccacttgg aggtaacata gtgagatttc atGGGGTTAA
  GGTGGTGGCT CACATCNTNN NNTTAGTACT CAGAAGACAG GATTGCTTCA AGTTCAAGGC
  TAGCCTGTGT TGAAGTGTGA AATATTGTCT TAAAAAAGGT CTCCTGCCCC ATggggctgg
  agagatggct cagaagttaa naacacttgg tgctcttcca gggagccctt attcagttcc
  cagctctcac atcaaatggc tcataactgc ctctaactcc tcctctaggg aagcccagtg
  ccctcttctg gccttcacag gtacntgctc actcacatac acacaaaaaa ataa      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12776819	Gfrp_JC8523_6	ROCHEBIO	RPAMM	f	SNP	A	C	C	A	A	C	C	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8279373					SNP	A	C	C	A	A	C	C	A	A	C	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118996506 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12107	CpG island 12107	1297 bp proximal
Gchfr	GTP cyclohydrolase I feedback regulator	1763 bp upstream
Rr563425	regulatory region 563425	411 bp distal
Rr563426	regulatory region 563426	1258 bp proximal
Rr563427	regulatory region 563427	1590 bp proximal
Rr563428	regulatory region 563428	1759 bp proximal
Tssr19604	transcription start site region 19604	1733 bp upstream
Tssr19605	transcription start site region 19605	1757 bp upstream