rs8279372 SNP Detail

Summary

• ID
  rs8279372
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118996515 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                              CTTTT
  GAAGGTTATA GACAGTTTTC AGGAGCTGGC TCTCTCCTCC CACTGTGTGG GTTCCAGGGC
  TCAAANTCAG GTTCTCAGGT TTGGCAGCAA GACCTTAACC AGTGAGCCAG TAAANTTNNT
  Y
  TTTATACCNC CAGACACTGC CTTACAGAGA GCAAAAAAAA AAAGAAGGAA TGTACAATGT
  ATGAGAATTT ccaggtgtgt ggtgcatggc tgtggttcca gctacttcag agactgangc
  aggagaanca cttgaacttg caagctaaag accacttgga ggtaacatag tgagatttca
  tGGGGTTAAG GTGGTGGCTC ACATCNTNNN NTTAGTACTC AGAAGACAGG ATTGCTTCAA
  GTTCAAGGCT AGCCTGTGTT GAAGTGTGAA ATATTGTCTT AAAAAAGGTC TCCTGCCCCA
  Tggggctgga gagatggctc agaagttaan aacacttggt gctcttccag ggagccctta
  ttcagttccc agctctcaca tcaaatggct cataactgcc tctaactcct cctctaggga
  agcccagtgc cctcttctgg ccttcacagg tacntgctca ctcacataca cacaaaaaaa
  taa                                                              
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12776818	Gfrp_JC8523_5	ROCHEBIO	RPAMM	f	SNP	C	T	T	C	C	T	T	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8279372					SNP	C	T	T	C	C	T	T	C	C	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118996515 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12107	CpG island 12107	1288 bp proximal
Gchfr	GTP cyclohydrolase I feedback regulator	1754 bp upstream
Rr563425	regulatory region 563425	420 bp distal
Rr563426	regulatory region 563426	1249 bp proximal
Rr563427	regulatory region 563427	1581 bp proximal
Rr563428	regulatory region 563428	1750 bp proximal
Tssr19604	transcription start site region 19604	1724 bp upstream
Tssr19605	transcription start site region 19605	1748 bp upstream