rs8279371 SNP Detail

Summary

• ID
  rs8279371
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118996517 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                CTT
  TTGAAGGTTA TAGACAGTTT TCAGGAGCTG GCTCTCTCCT CCCACTGTGT GGGTTCCAGG
  GCTCAAANTC AGGTTCTCAG GTTTGGCAGC AAGACCTTAA CCAGTGAGCC AGTAAANTTN
  W
  TNTTTATACC NCCAGACACT GCCTTACAGA GAGCAAAAAA AAAAAGAAGG AATGTACAAT
  GTATGAGAAT TTccaggtgt gtggtgcatg gctgtggttc cagctacttc agagactgan
  gcaggagaan cacttgaact tgcaagctaa agaccacttg gaggtaacat agtgagattt
  catGGGGTTA AGGTGGTGGC TCACATCNTN NNNTTAGTAC TCAGAAGACA GGATTGCTTC
  AAGTTCAAGG CTAGCCTGTG TTGAAGTGTG AAATATTGTC TTAAAAAAGG TCTCCTGCCC
  CATggggctg gagagatggc tcagaagtta anaacacttg gtgctcttcc agggagccct
  tattcagttc ccagctctca catcaaatgg ctcataactg cctctaactc ctcctctagg
  gaagcccagt gccctcttct ggccttcaca ggtacntgct cactcacata cacacaaaaa
  aataa                                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12776817	Gfrp_JC8523_4	ROCHEBIO	RPAMM	f	SNP	A	T	T	A	A	T	T	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8279371					SNP	A	T	T	A	A	T	T	A	A	T	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118996517 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12107	CpG island 12107	1286 bp proximal
Gchfr	GTP cyclohydrolase I feedback regulator	1752 bp upstream
Rr563425	regulatory region 563425	422 bp distal
Rr563426	regulatory region 563426	1247 bp proximal
Rr563427	regulatory region 563427	1579 bp proximal
Rr563428	regulatory region 563428	1748 bp proximal
Tssr19604	transcription start site region 19604	1722 bp upstream
Tssr19605	transcription start site region 19605	1746 bp upstream