rs8279369 SNP Detail

Summary

• ID
  rs8279369
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118996521 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

   CTTTTGAAG GTTATAGACA GTTTTCAGGA GCTGGCTCTC TCCTCCCACT GTGTGGGTTC
  CAGGGCTCAA ANTCAGGTTC TCAGGTTTGG CAGCAAGACC TTAACCAGTG AGCCAGTAAA
  Y
  TTNNTNTTTA TACCNCCAGA CACTGCCTTA CAGAGAGCAA AAAAAAAAAG AAGGAATGTA
  CAATGTATGA GAATTTccag gtgtgtggtg catggctgtg gttccagcta cttcagagac
  tgangcagga gaancacttg aacttgcaag ctaaagacca cttggaggta acatagtgag
  atttcatGGG GTTAAGGTGG TGGCTCACAT CNTNNNNTTA GTACTCAGAA GACAGGATTG
  CTTCAAGTTC AAGGCTAGCC TGTGTTGAAG TGTGAAATAT TGTCTTAAAA AAGGTCTCCT
  GCCCCATggg gctggagaga tggctcagaa gttaanaaca cttggtgctc ttccagggag
  cccttattca gttcccagct ctcacatcaa atggctcata actgcctcta actcctcctc
  tagggaagcc cagtgccctc ttctggcctt cacaggtacn tgctcactca catacacaca
  aaaaaataa                                                        
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12776815	Gfrp_JC8523_2	ROCHEBIO	RPAMM	f	SNP	C	T	T	C	C	T	T	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8279369					SNP	C	T	T	C	C	T	T	C	C	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118996521 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12107	CpG island 12107	1282 bp proximal
Gchfr	GTP cyclohydrolase I feedback regulator	1748 bp upstream
Rr563425	regulatory region 563425	426 bp distal
Rr563426	regulatory region 563426	1243 bp proximal
Rr563427	regulatory region 563427	1575 bp proximal
Rr563428	regulatory region 563428	1744 bp proximal
Tssr19604	transcription start site region 19604	1718 bp upstream
Tssr19605	transcription start site region 19605	1742 bp upstream