rs8279366 SNP Detail

Summary

• ID
  rs8279366
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118996765 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

    AGAGAGGT CTTTTTACCC TAAGATTGTG GGGGAGTTGT GGTGGTGGTT GTTGTGTgtt
  ttgatttttg tatcggagat atagggagaa aaagagagag agagacagag agagagagag
  agacagagag agagagacag anagacanag anacagagag agagaACTGA ATCTGTCTCA
  GAACAATCAC AAACCAANNC CTNATAAGGA AACAAAGGAA CAAAACAACA AACCCTCACC
  CCACCCCATA ACAAAAAGAA CCAATAGGGG AAACAAGATT GGCAGCTNAC TTGGCTAGGC
  W
  CTCCATGGGA GCAGAGATGA TCAATAGGCA TATNACCAGT TGCCCAAACC TTTAGGAATC
  CTAGAAATGC AATGTTTTAT CGTGTGTCTT GTCTCTGTGT GTTCACAGAC CTTGTCAAGG
  CTAACTTCTG AAGGTCATAG ACAGTTTT                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J
ss12776812	Gfrp_JC8521_2	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A			T	A	A
ss24751739	Gfrp_JC8521_4	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	T	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J
rs8279366					SNP	A	A	A	A	A	A	A	A	A	T	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118996765 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12107	CpG island 12107	1038 bp proximal
Gchfr	GTP cyclohydrolase I feedback regulator	1504 bp upstream
Rr563425	regulatory region 563425	670 bp distal
Rr563426	regulatory region 563426	999 bp proximal
Rr563427	regulatory region 563427	1331 bp proximal
Rr563428	regulatory region 563428	1500 bp proximal
Tssr19604	transcription start site region 19604	1474 bp upstream
Tssr19605	transcription start site region 19605	1498 bp upstream