rs8279365 SNP Detail

Summary

• ID
  rs8279365
• Variation Type
  SNP
• Alleles
  A/C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118996778 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AATAG GGGAAACAAG ATTGGCAGCT
  V
  ACTTGGCTAG GCACTCCATG GGAGC                                      
  
  V = A/C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	NZB/BlNJ	NZW/Lac	SM/J
ss12776811	Gfrp_JC8521_1	ROCHEBIO	RPAMM	f	SNP	G		G	G	G		G	G	G	C	G	G			G	G
ss24751737	Slpi_JC8512_1	ROCHEBIO	RPAMM	f	SNP	G		G	G	G	A	G	G	G	A
ss24751738	Gfrp_JC8521_3	ROCHEBIO	RPAMM	f	SNP	G		G	G	G		G	G	G	C	G	G		G	G	G	G
ss147324315	ENSMUSSNP6434303	ENSEMBL	ENSEMBL_Sanger	r	SNP		C										C
ss320473933	CHEV_2_118992033	CHEVERUD	SCREENING_POP	r	SNP													T				C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	NZB/BlNJ	NZW/Lac	SM/J
rs8279365					SNP	G	G	G	G	G	A	G	G	G	C	G	G	A	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118996778 () rs orientation: reverse

Symbol	Name	Function Class
Gchfr	GTP cyclohydrolase I feedback regulator	1491 bp upstream
Rr563425	regulatory region 563425	683 bp distal
Rr563426	regulatory region 563426	986 bp proximal
Rr563427	regulatory region 563427	1318 bp proximal
Rr563428	regulatory region 563428	1487 bp proximal
Tssr19604	transcription start site region 19604	1461 bp upstream
Tssr19605	transcription start site region 19605	1485 bp upstream