rs8279360 SNP Detail

Summary

• ID
  rs8279360
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118998328 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                           TA GGATGGGGTA GCGCGCCCAG
  CTATTTNGCT GTGTGTGTGT GGGGGGGGGC ACCAGGTATC CTTTGAAAGG GGATTTGAGG
  AGACTTATAA AGCAGCCAGT ACCACCTCCC TCCCACGTCC CCCCCCCGAA ACTTCACCTA
  GAGAANCGTG ACCTCAGACC CCCGCGTGGT GCTCTCCAGG CTGCCCGCAG CCCTCTCCAC
  CTCTAGCCCG AGTTCTCTCC GCATCAGAAC GAGCCCTGCC TGGAGGGGGC TACAGGTGAG
  CCGCTGTGTG CGCAGCTTAG CNTGGCCTTT GGCGTGCGGG CCCTGGCTGC AGCGCTTGTG
  AAGCGGGTCG TGGGTGTCCC CGCGGAACTC CCNGCCCATC CAGTCGCCTG ACCCTGCCTG
  GTGTCCGCGC CGCGGGGGCG TGGTAGGCCG GTTNCGGGAC CATCAGGAAA GTCCCTTAGA
  GTGGCTGTCG CTGTNACCCA CTCCAGGTAC TCACCATACG GATCTGAGTG CTGATGAGCA
  R
  ATAGGGCATG GTGCGTGGCT GGGGCTGCCC GCGA                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12776806	Gfrp_JC8519_6	ROCHEBIO	RPAMM	f	SNP	G	A	G	G	A	A	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8279360					SNP	G	A	G	G	A	A	G	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118998328 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12107	CpG island 12107	within coordinates
Gchfr	GTP cyclohydrolase I feedback regulator	Coding-Synonymous
Rr563426	regulatory region 563426	64 bp distal
Rr563427	regulatory region 563427	211 bp distal
Rr563428	regulatory region 563428	within coordinates
Tssr19604	transcription start site region 19604	68 bp downstream
Tssr19605	transcription start site region 19605	12 bp downstream