rs8279359 SNP Detail

Summary

• ID
  rs8279359
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118998374 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGTCC CTTAGAGTGG CTGTCGCTGT
  Y
  ACCCACTCCA GGTACTCACC ATACG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12776805	Gfrp_JC8519_5	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	C	T	T	T	C	T	T		C	T	T		C
ss24751736	Slpi_JC8510_2	ROCHEBIO	RPAMM	f	SNP	T		T	T	C	T	T		C
ss147324365	ENSMUSSNP2814890	ENSEMBL	ENSEMBL_Sanger	r	SNP			A
ss320473944	CHEV_2_118993629	CHEVERUD	SCREENING_POP	r	SNP												G				A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8279359					SNP	T	T	T	T	C	T	T	T	C	T	T	C	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118998374 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12107	CpG island 12107	within coordinates
Gchfr	GTP cyclohydrolase I feedback regulator	Intron
Rr563426	regulatory region 563426	110 bp distal
Rr563427	regulatory region 563427	257 bp distal
Rr563428	regulatory region 563428	within coordinates
Tssr19604	transcription start site region 19604	114 bp downstream
Tssr19605	transcription start site region 19605	58 bp downstream