rs8279357 SNP Detail

Summary

• ID
  rs8279357
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118998476 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              CTCAGACCCC CGCGTGGTGC
  TCTCCAGGCT GCCCGCAGCC CTCTCCACCT CTAACCCGAA TTCTCTCTGC ATCAGAACGA
  GCCCTGCCTG GAGGGGGCTA CAGGTGAGCC GCTGTGTGCG CAGCTTAGCT TGGCCTTTGG
  CGTGCGGGCC CTGGCTGCAG CGCTTGTGAA GCGGGTCGTG GGTGTCCCCG CGGAACTCCC
  W
  GCCCATCCAG TCGCCTGACC CTGCCTGGTG TCCGCGCCGC GGGGGCGTGG TAGGCCGGTT
  GCGGGACCAT CAGGAAAGTC CCTTAGAGTG GCTGTCGCTG TCACCCACTC CAGGTACTCA
  CCATACGGAT CTGAGTGCTG ATGAGCAGAT AGGGCATGGT GCGTGGCTGG GGCTGCCCGC
  GACCACAGTC CCGTTACTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12776803	Gfrp_JC8519_3	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8279357					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118998476 () rs orientation: reverse

Symbol	Name	Function Class
Gchfr	GTP cyclohydrolase I feedback regulator	Intron
Rr563426	regulatory region 563426	212 bp distal
Rr563427	regulatory region 563427	359 bp distal
Rr563428	regulatory region 563428	within coordinates
Tssr19604	transcription start site region 19604	216 bp downstream
Tssr19605	transcription start site region 19605	160 bp downstream