rs8279354 SNP Detail

Summary

• ID
  rs8279354
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118997222 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AAGAA CCCCTACAGG GGCTGGGATG
  M
  TGCTCCGCTG ATTCCATGGT TCGCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12776800	Gfrp_JC8518_5	ROCHEBIO	RPAMM	f	SNP	C		C	C	C	A	C	C	C	A	C	C		A	C	C		C
ss24757546	Slpi_JC8509_2	ROCHEBIO	RPAMM	r	SNP	G		G	G	G	T	G	G	G	T
ss45213460	mCV24411823	ABI	CRAMUS_MOUSE	r	SNP		G								T
ss147324330	ENSMUSSNP5981373	ENSEMBL	ENSEMBL_Sanger	r	SNP		G		G
ss320473936	CHEV_2_118992477	CHEVERUD	SCREENING_POP	r	SNP													T				G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8279354					SNP	C	C	C	C	C	A	C	C	C	A	C	C	A	A	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118997222 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12107	CpG island 12107	581 bp proximal
Gchfr	GTP cyclohydrolase I feedback regulator	1047 bp upstream
Rr563425	regulatory region 563425	1127 bp distal
Rr563426	regulatory region 563426	542 bp proximal
Rr563427	regulatory region 563427	874 bp proximal
Rr563428	regulatory region 563428	1043 bp proximal
Tssr19604	transcription start site region 19604	1017 bp upstream
Tssr19605	transcription start site region 19605	1041 bp upstream