rs8279342 SNP Detail

Summary

• ID
  rs8279342
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118995766 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              ATCCCCAGCA ACCACATGGC
  AGCTCACAAC CATCTGTAAT AGAATTCAAT GCTGTCTTCT GGTGTGTCTG AAGACAGCTA
  CAGAGTACTC ACATACATAA AATAAATAAT TAAAACACAA AACTTACAGG ACTTTCCTCC
  CCACAAAAAC ATGAAGAAGA AGAAAAGACT CTAAAAACCA AATGTAGGTA AAGTGCTGGC
  S
  GTTGGGACTA TCTGTCTGCT GAGAGCACTT CTATTCTTCA AAGTTGTGAT TGTCACAATC
  AAGTTTCACC CCTTGTGACA AAAAATAAAT CAGCCTGGAG TAATGGACAC CTGTAATCTC
  AGTCCAGCTT TGACTCCCAA TGGGTCATGT GTTTCCAGTC ACCCACCCAG GAACTCTTTG
  GATCCACTAA TGAAAGACAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12776788	Gfrp_JC8517_7	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8279342					SNP	G	G	G	G	G	G	G	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118995766 () rs orientation: reverse

Symbol	Name	Function Class
Rr563424	regulatory region 563424	1848 bp distal
Rr563425	regulatory region 563425	308 bp proximal
Rr563426	regulatory region 563426	1998 bp proximal