rs8279341 SNP Detail

Summary

• ID
  rs8279341
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118995781 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              AGAGATCCTA GTTCAATCCC
  CAGCAACCAC ATGGCAGCTC ACAACCATCT GTAATAGAAT TCAATGCTGT CTTCTGGTGT
  GTCTGAAGAC AGCTACAGAG TACTCACATA CATAAAATAA ATAATTAAAA CACAAAACTT
  ACAGGACTTT CCTCCCCACA AAAACATGAA GAAGAAGAAA AGACTCTAAA AACCAAATGT
  W
  GGTAAAGTGC TGGCGGTTGG GACTATCTGT CTGCTGAGAG CACTTCTATT CTTCAAAGTT
  GTGATTGTCA CAATCAAGTT TCACCCCTTG TGACAAAAAA TAAATCAGCC TGGAGTAATG
  GACACCTGTA ATCTCAGTCC AGCTTTGACT CCCAATGGGT CATGTGTTTC CAGTCACCCA
  CCCAGGAACT CTTTGGATCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	BALB/cByJ	BALB/cJ	CAST/EiJ	MRL/MpJ	SPRET/EiJ
ss12776787	Gfrp_JC8517_6	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	BALB/cByJ	BALB/cJ	CAST/EiJ	MRL/MpJ	SPRET/EiJ
rs8279341					SNP	A	A	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118995781 () rs orientation: reverse

Symbol	Name	Function Class
Rr563424	regulatory region 563424	1863 bp distal
Rr563425	regulatory region 563425	293 bp proximal
Rr563426	regulatory region 563426	1983 bp proximal