rs8279338 SNP Detail

Summary

• ID
  rs8279338
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118995946 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GTTCA ATCCCCAGCA ACCACATGGC
  D
  GCTCACAACC ATCTGTAATA GAATT                                      
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	CAST/EiJ	DBA/2J	LG/J	SM/J	SPRET/EiJ
ss12776784	Gfrp_JC8517_3	ROCHEBIO	RPAMM	f	SNP	T	G				A
ss147324267	ENSMUSSNP1475865	ENSEMBL	ENSEMBL_Sanger	r	SNP			C
ss320473922	CHEV_2_118991201	CHEVERUD	SCREENING_POP	r	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	CAST/EiJ	DBA/2J	LG/J	SM/J	SPRET/EiJ
rs8279338					SNP	T	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118995946 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12107	CpG island 12107	1857 bp proximal
Rr563425	regulatory region 563425	128 bp proximal
Rr563426	regulatory region 563426	1818 bp proximal