rs8275027 SNP Detail

Summary

• ID
  rs8275027
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45094465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGCTGGG ATTCAAACGT
  GGTTCTTTAT AAATCCTGTG TCTGTGTTTT TAGGGAAAGG AAATAGGAAA TAAAGGAGGG
  AGGGAGGGAA GGAAGAAGAG AGGCAGGCAG GCACAAAGGA AGGAAGGATG GAAGGAAGGA
  AGGAAGGAAG GACGGCAGGC AGAGAGGTTG CTGGCGTGAG GTGACAGCTT CCTATGGCCC
  Y
  GATTGAGTAC CTGTCATAGC CCATCTGTCT GCAGGCTGTC TTGGCCAGTG CTTCTGTGAA
  GTTGTCGAAA CAGACTGAGG CCCAGGTCCC TGTGGCTGCA TCCAGCACCT GCAGGGTGGA
  TCTGTCCTTG GAGAGCCGGA CTAGGAGGGA AGGCGCCTGG GTCAGCTGGA GGGTAGGGCC
  ACTTTATCCA AGACCCTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
ss12772320	Tmprss4_JC8223_6	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
rs8275027					SNP	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45094465 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57797	predicted gene, 57797			within coordinates
Rr677858	regulatory region 677858			1093 bp distal
Rr677859	regulatory region 677859			304 bp distal
Smim35	small integral membrane protein 35			Intron
				Noncoding-Transcript-Variant
Tmprss4	transmembrane protease, serine 4			Intron
				Noncoding-Transcript-Variant