rs8273642 SNP Detail

Summary

• ID
  rs8273642
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:75463081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAGAGAA AAGTAAAAAC
  CTGACCCCCC CCCCCAAAGG GTCACTTCTT GTAATGAACA TGGTACAATT TCTCCAAGAT
  TCTGCACTTA ATTTTCACTT AATGAAAGCA TGAATATCTG TAAAGTAAGT TCTGTGAAAG
  TTTCACCCAT AGTTTTTGAA AATGGTAAGA AAATAGAAAT GAAAAGGACT ATTCTCTTAA
  Y
  GGCAACACTG AGCTATTCCT AAATATTATC TATCCTTTAA AAATGGCGTG TGGAAAGTGA
  GTGTTATCAT TCAGTAGACC CCAGAAAAAG GGGTAAAGAT CTAAGCTAAA GCGATCCTTC
  CTGTTTTACA GAACATTAGA GAGGATGCTT TGGCAAAGCT TCCACTCCAC GTCAACAAAC
  CAACTCTCTG CACCTCACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac
ss12770902	Serpini1_JC8103_3	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac
rs8273642					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:75463081 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13269	CpG island 13269	550 bp proximal
Pdcd10	programmed cell death 10	Intron
Rr578348	regulatory region 578348	72 bp proximal
Rr578349	regulatory region 578349	1027 bp proximal
Rr578350	regulatory region 578350	1063 bp proximal
Rr578351	regulatory region 578351	1784 bp proximal
Serpini1	serine (or cysteine) peptidase inhibitor, clade I, member 1	1719 bp upstream
Tssr29563	transcription start site region 29563	1736 bp upstream
Tssr29564	transcription start site region 29564	1756 bp upstream
Tssr29565	transcription start site region 29565	1802 bp upstream
Tssr29566	transcription start site region 29566	1820 bp upstream
Tssr33586	transcription start site region 33586	1015 bp downstream
Tssr33587	transcription start site region 33587	1129 bp downstream
Tssr33588	transcription start site region 33588	1150 bp downstream