rs8273641 SNP Detail

Summary

• ID
  rs8273641
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:75462992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATAAGAA TGAATTAAAA
  CTCACTGATG ATGCCAAGAA AAGAAAATAT ACAAGTGTAT GTTTTACTGT CTACACATGG
  AGTGAAGAAA ATGAGAGAAA AGTAAAAACC TGACCCCCCC CCCCAAAGGG TCACTTCTTG
  TAATGAACAT GGTACAATTT CTCCAAGATT CTGCACTTAA TTTTCACTTA ATGAAAGCAT
  K
  AATATCTGTA AAGTAAGTTC TGTGAAAGTT TCACCCATAG TTTTTGAAAA TGGTAAGAAA
  ATAGAAATGA AAAGGACTAT TCTCTTAATG GCAACACTGA GCTATTCCTA AATATTATCT
  ATCCTTTAAA AATGGCGTGT GGAAAGTGAG TGTTATCATT CAGTAGACCC CAGAAAAAGG
  GGTAAAGATC TAAGCTAAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac
ss12770901	Serpini1_JC8103_2	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac
rs8273641					SNP	G	G	G	G	G	G	G	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:75462992 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13269	CpG island 13269	639 bp proximal
Pdcd10	programmed cell death 10	Intron
Rr578348	regulatory region 578348	161 bp proximal
Rr578349	regulatory region 578349	1116 bp proximal
Rr578350	regulatory region 578350	1152 bp proximal
Rr578351	regulatory region 578351	1873 bp proximal
Serpini1	serine (or cysteine) peptidase inhibitor, clade I, member 1	1808 bp upstream
Tssr29563	transcription start site region 29563	1825 bp upstream
Tssr29564	transcription start site region 29564	1845 bp upstream
Tssr29565	transcription start site region 29565	1891 bp upstream
Tssr29566	transcription start site region 29566	1909 bp upstream
Tssr33586	transcription start site region 33586	1104 bp downstream
Tssr33587	transcription start site region 33587	1218 bp downstream
Tssr33588	transcription start site region 33588	1239 bp downstream